PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32951-33000 / 86044 show all | |||||||||||||||
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e0 | * | 17.1429 | 10.3448 | 50.0000 | 94.9192 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m2_e1 | * | 17.1429 | 10.3448 | 50.0000 | 95.0339 | 12 | 104 | 11 | 11 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | * | 16.3932 | 10.4060 | 38.6054 | 37.9092 | 223 | 1920 | 227 | 361 | 360 | 99.7230 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 18.7138 | 10.4396 | 90.2235 | 66.4165 | 247 | 2119 | 323 | 35 | 30 | 85.7143 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | hetalt | 18.8882 | 10.4634 | 96.9432 | 40.6736 | 219 | 1874 | 222 | 7 | 7 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | * | hetalt | 18.8152 | 10.4862 | 91.4634 | 56.9177 | 220 | 1878 | 225 | 21 | 21 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 17.9104 | 10.5263 | 60.0000 | 67.7419 | 10 | 85 | 12 | 8 | 8 | 100.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l100_m0_e0 | het | 16.6667 | 10.5263 | 40.0000 | 95.2381 | 2 | 17 | 2 | 3 | 1 | 33.3333 | |
| gduggal-snapplat | INDEL | I6_15 | map_l100_m1_e0 | * | 17.3913 | 10.5263 | 50.0000 | 94.3445 | 12 | 102 | 11 | 11 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | D6_15 | map_l125_m1_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.3333 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-snapplat | INDEL | D6_15 | map_l125_m2_e0 | hetalt | 19.0476 | 10.5263 | 100.0000 | 98.5294 | 2 | 17 | 2 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 18.9573 | 10.5541 | 93.0233 | 70.5479 | 40 | 339 | 40 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.9437 | 10.5927 | 89.5161 | 64.6724 | 84 | 709 | 111 | 13 | 9 | 69.2308 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_diTR_51to200 | het | 13.8244 | 10.6122 | 19.8251 | 85.5882 | 52 | 438 | 68 | 275 | 74 | 26.9091 | |
| eyeh-varpipe | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.8114 | 10.6154 | 82.5397 | 71.8121 | 69 | 581 | 104 | 22 | 17 | 77.2727 | |
| eyeh-varpipe | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 19.0780 | 10.6557 | 91.0204 | 63.7574 | 182 | 1526 | 223 | 22 | 20 | 90.9091 | |
| gduggal-bwafb | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | * | 18.4100 | 10.6796 | 66.6667 | 69.1589 | 22 | 184 | 22 | 11 | 10 | 90.9091 | |
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.9971 | 10.7113 | 83.8926 | 61.0966 | 128 | 1067 | 125 | 24 | 18 | 75.0000 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 10.7143 | 0.0000 | 0.0000 | 3 | 25 | 0 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e1 | * | 18.7500 | 10.7143 | 75.0000 | 97.8610 | 3 | 25 | 3 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | INDEL | I6_15 | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 19.2616 | 10.7547 | 92.1569 | 64.7059 | 57 | 473 | 94 | 8 | 7 | 87.5000 | |
| ciseli-custom | INDEL | D1_5 | HG002compoundhet | * | 12.2198 | 10.7660 | 14.1277 | 72.1816 | 1317 | 10916 | 1354 | 8230 | 6259 | 76.0510 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | * | 11.3424 | 10.7807 | 11.9658 | 93.0543 | 29 | 240 | 28 | 206 | 15 | 7.2816 | |
| ciseli-custom | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | * | 17.6716 | 10.8017 | 48.5470 | 60.1499 | 322 | 2659 | 284 | 301 | 281 | 93.3555 | |
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 10.8108 | 0.0000 | 0.0000 | 8 | 66 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 16.9764 | 10.8209 | 39.3750 | 52.0958 | 58 | 478 | 63 | 97 | 77 | 79.3814 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 19.5652 | 10.8434 | 100.0000 | 64.0000 | 9 | 74 | 9 | 0 | 0 | ||
| eyeh-varpipe | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 19.3536 | 10.8571 | 89.0110 | 49.7238 | 19 | 156 | 81 | 10 | 10 | 100.0000 | |
| gduggal-snapplat | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | het | 16.5989 | 10.9091 | 34.6939 | 47.3118 | 36 | 294 | 34 | 64 | 12 | 18.7500 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 17.4295 | 10.9553 | 42.6117 | 84.6357 | 125 | 1016 | 124 | 167 | 140 | 83.8323 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 18.4615 | 11.0599 | 55.8140 | 75.1445 | 24 | 193 | 24 | 19 | 14 | 73.6842 | |
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 18.9387 | 11.0818 | 65.0794 | 81.9484 | 42 | 337 | 41 | 22 | 12 | 54.5455 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 19.1153 | 11.0818 | 69.4915 | 82.2823 | 42 | 337 | 41 | 18 | 11 | 61.1111 | |
| ciseli-custom | INDEL | I16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 17.8423 | 11.0825 | 45.7447 | 82.7206 | 43 | 345 | 43 | 51 | 42 | 82.3529 | |
| eyeh-varpipe | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 19.7111 | 11.0907 | 88.4956 | 74.5925 | 302 | 2421 | 400 | 52 | 46 | 88.4615 | |
| eyeh-varpipe | INDEL | D16_PLUS | segdup | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.0000 | 1 | 8 | 1 | 0 | 0 | ||
| ckim-isaac | INDEL | D16_PLUS | map_l125_m0_e0 | het | 18.1818 | 11.1111 | 50.0000 | 97.1014 | 1 | 8 | 1 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m1_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.5309 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| ckim-isaac | INDEL | D16_PLUS | map_l125_m2_e0 | * | 19.3548 | 11.1111 | 75.0000 | 97.8378 | 3 | 24 | 3 | 1 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | het | 3.7037 | 11.1111 | 2.2222 | 94.8276 | 3 | 24 | 1 | 44 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | map_siren | hetalt | 19.7183 | 11.1111 | 87.5000 | 93.7008 | 8 | 64 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | het | 11.1111 | 100.0000 | 1 | 8 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m1_e0 | het | 18.9474 | 11.1111 | 64.2857 | 75.6522 | 2 | 16 | 18 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e0 | het | 19.0000 | 11.1111 | 65.5172 | 77.3438 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-snapvard | INDEL | I16_PLUS | map_l100_m2_e1 | het | 19.0000 | 11.1111 | 65.5172 | 77.8626 | 2 | 16 | 19 | 10 | 8 | 80.0000 | |
| gduggal-bwaplat | SNP | * | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.9796 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | SNP | tv | map_l125_m0_e0 | hetalt | 20.0000 | 11.1111 | 100.0000 | 98.9796 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 20.0000 | 11.1111 | 100.0000 | 99.5614 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 20.0000 | 11.1111 | 100.0000 | 99.9586 | 1 | 8 | 1 | 0 | 0 | ||
| gduggal-bwaplat | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 20.0000 | 11.1111 | 100.0000 | 97.3913 | 3 | 24 | 3 | 0 | 0 | ||