PrecisionFDA
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32601-32650 / 86044 show all | |||||||||||||||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 4.1057 | 0.0000 | 0.0000 | 292 | 6820 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e1 | hetalt | 0.0000 | 4.1096 | 0.0000 | 0.0000 | 3 | 70 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 4.1237 | 0.0000 | 0.0000 | 4 | 93 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e1 | * | 7.4074 | 4.1237 | 36.3636 | 95.4545 | 4 | 93 | 4 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.1260 | 0.0000 | 0.0000 | 296 | 6878 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.1314 | 0.0000 | 0.0000 | 39 | 905 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 4.1475 | 0.0000 | 0.0000 | 9 | 208 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | map_l100_m2_e0 | hetalt | 0.0000 | 4.1667 | 0.0000 | 0.0000 | 2 | 46 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | segdup | het | 7.4074 | 4.1667 | 33.3333 | 97.7778 | 1 | 23 | 1 | 2 | 0 | 0.0000 | |
| gduggal-snapplat | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 7.1429 | 4.1667 | 25.0000 | 86.6667 | 1 | 23 | 1 | 3 | 2 | 66.6667 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.1958 | 0.0000 | 0.0000 | 12 | 274 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | HG002compoundhet | het | 6.6071 | 4.2553 | 14.7700 | 45.8005 | 2 | 45 | 61 | 352 | 188 | 53.4091 | |
| gduggal-snapvard | INDEL | I16_PLUS | segdup | * | 7.7994 | 4.2553 | 46.6667 | 93.6170 | 2 | 45 | 7 | 8 | 7 | 87.5000 | |
| gduggal-snapvard | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | homalt | 8.1356 | 4.2553 | 92.3077 | 59.3750 | 8 | 180 | 12 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | INDEL | I16_PLUS | HG002compoundhet | het | 2.3810 | 4.2553 | 1.6529 | 50.2058 | 2 | 45 | 2 | 119 | 119 | 100.0000 | |
| ciseli-custom | INDEL | D1_5 | map_l100_m1_e0 | hetalt | 0.0000 | 4.2553 | 0.0000 | 0.0000 | 2 | 45 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 8.1688 | 4.2857 | 86.9565 | 86.0606 | 15 | 335 | 20 | 3 | 2 | 66.6667 | |
| ciseli-custom | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.2864 | 0.0000 | 0.0000 | 476 | 10629 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.2940 | 0.0000 | 0.0000 | 662 | 14755 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.3012 | 0.0000 | 0.0000 | 293 | 6519 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 0.0000 | 4.3324 | 0.0000 | 0.0000 | 49 | 1082 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | hetalt | 0.0000 | 4.3478 | 0.0000 | 0.0000 | 1 | 22 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 4.3478 | 0.0000 | 0.0000 | 1 | 22 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 0.0000 | 4.3478 | 0.0000 | 96.8254 | 4 | 88 | 0 | 2 | 0 | 0.0000 | |
| gduggal-bwavard | INDEL | * | map_l150_m2_e1 | hetalt | 0.0000 | 4.3478 | 0.0000 | 0.0000 | 1 | 22 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.3582 | 0.0000 | 0.0000 | 237 | 5201 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | het | 7.2121 | 4.3609 | 20.8333 | 84.0266 | 29 | 636 | 40 | 152 | 95 | 62.5000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 4.4114 | 0.0000 | 0.0000 | 205 | 4442 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m1_e0 | hetalt | 0.0000 | 4.4118 | 0.0000 | 0.0000 | 3 | 65 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | map_l100_m2_e0 | hetalt | 0.0000 | 4.4118 | 0.0000 | 0.0000 | 3 | 65 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 4.4216 | 0.0000 | 0.0000 | 211 | 4561 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 0.0000 | 4.4216 | 0.0000 | 0.0000 | 211 | 4561 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m2_e0 | * | 7.9208 | 4.4444 | 36.3636 | 95.3586 | 4 | 86 | 4 | 7 | 2 | 28.5714 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 0.0000 | 4.4607 | 0.0000 | 0.0000 | 263 | 5633 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 0.0000 | 4.4607 | 0.0000 | 0.0000 | 263 | 5633 | 0 | 0 | 0 | ||
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 8.0635 | 4.5113 | 37.9310 | 60.2740 | 6 | 127 | 22 | 36 | 4 | 11.1111 | |
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 4.5442 | 0.0000 | 0.0000 | 476 | 9999 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l100_m2_e1 | hetalt | 0.0000 | 4.5455 | 0.0000 | 0.0000 | 6 | 126 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 8.6207 | 4.5455 | 83.3333 | 89.2857 | 2 | 42 | 5 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.5455 | 0.0000 | 0.0000 | 6 | 126 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 4.5872 | 0.0000 | 0.0000 | 40 | 832 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | * | 7.6190 | 4.5977 | 22.2222 | 91.6667 | 4 | 83 | 4 | 14 | 11 | 78.5714 | |
| gduggal-snapvard | INDEL | D16_PLUS | map_l100_m1_e0 | * | 8.2474 | 4.5977 | 40.0000 | 95.3052 | 4 | 83 | 4 | 6 | 1 | 16.6667 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | * | 8.0617 | 4.6278 | 31.2500 | 60.9756 | 23 | 474 | 30 | 66 | 20 | 30.3030 | |
| anovak-vg | INDEL | I16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.6312 | 0.0000 | 0.0000 | 27 | 556 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 4.6512 | 0.0000 | 0.0000 | 2 | 41 | 0 | 0 | 0 | ||
| eyeh-varpipe | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 8.5511 | 4.6512 | 52.9412 | 66.0000 | 8 | 164 | 9 | 8 | 3 | 37.5000 | |
| ckim-isaac | INDEL | I16_PLUS | map_siren | * | 8.7912 | 4.6512 | 80.0000 | 97.2376 | 4 | 82 | 4 | 1 | 0 | 0.0000 | |
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 4.6910 | 0.0000 | 0.0000 | 189 | 3840 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 4.6943 | 0.0000 | 0.0000 | 380 | 7715 | 0 | 0 | 0 | ||