PrecisionFDA
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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
32451-32500 / 86044 show all | |||||||||||||||
| gduggal-bwavard | INDEL | D6_15 | HG002complexvar | hetalt | 0.0000 | 2.1718 | 0.0000 | 0.0000 | 22 | 991 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 2.1739 | 100.0000 | 2 | 90 | 0 | 0 | 0 | ||||
| anovak-vg | INDEL | I6_15 | lowcmp_SimpleRepeat_diTR_51to200 | * | 4.0816 | 2.1739 | 33.3333 | 62.5000 | 2 | 90 | 2 | 4 | 2 | 50.0000 | |
| ghariani-varprowl | INDEL | I6_15 | segdup | hetalt | 0.0000 | 2.2222 | 0.0000 | 0.0000 | 1 | 44 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.2727 | 0.0000 | 0.0000 | 1 | 43 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.2727 | 0.0000 | 0.0000 | 1 | 43 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | het | 4.1479 | 2.2831 | 22.6415 | 66.0800 | 20 | 856 | 48 | 164 | 113 | 68.9024 | |
| ghariani-varprowl | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 2.2929 | 0.0000 | 0.0000 | 31 | 1321 | 0 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 4.4944 | 2.2989 | 100.0000 | 99.9989 | 2 | 85 | 1 | 0 | 0 | ||
| gduggal-snapvard | INDEL | I16_PLUS | map_siren | * | 4.4800 | 2.3256 | 60.8696 | 78.5047 | 2 | 84 | 28 | 18 | 12 | 66.6667 | |
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.3256 | 0.0000 | 0.0000 | 2 | 84 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | * | map_l125_m2_e1 | hetalt | 0.0000 | 2.3256 | 0.0000 | 0.0000 | 1 | 42 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.3529 | 0.0000 | 0.0000 | 2 | 83 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.3529 | 0.0000 | 0.0000 | 2 | 83 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 4.6004 | 2.3747 | 73.3333 | 89.3617 | 9 | 370 | 11 | 4 | 2 | 50.0000 | |
| gduggal-bwavard | INDEL | * | map_l125_m2_e0 | hetalt | 0.0000 | 2.3810 | 0.0000 | 0.0000 | 1 | 41 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.3952 | 0.0000 | 0.0000 | 4 | 163 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 2.3960 | 0.0000 | 0.0000 | 19 | 774 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | HG002complexvar | homalt | 4.7297 | 2.4221 | 100.0000 | 77.7778 | 7 | 282 | 8 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 3.3784 | 2.4272 | 5.5556 | 80.2198 | 5 | 201 | 1 | 17 | 1 | 5.8824 | |
| gduggal-snapvard | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | homalt | 4.7064 | 2.4535 | 57.5758 | 90.4348 | 29 | 1153 | 19 | 14 | 4 | 28.5714 | |
| gduggal-bwavard | INDEL | * | map_l125_m1_e0 | hetalt | 0.0000 | 2.5000 | 0.0000 | 0.0000 | 1 | 39 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | * | 4.6119 | 2.5026 | 29.3478 | 74.2297 | 24 | 935 | 27 | 65 | 39 | 60.0000 | |
| gduggal-bwavard | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 0.0000 | 2.5316 | 0.0000 | 0.0000 | 8 | 308 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.5316 | 0.0000 | 0.0000 | 16 | 616 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 4.7170 | 2.5381 | 33.3333 | 92.1875 | 5 | 192 | 5 | 10 | 7 | 70.0000 | |
| jpowers-varprowl | INDEL | D1_5 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 4.7393 | 2.5381 | 35.7143 | 92.6316 | 5 | 192 | 5 | 9 | 7 | 77.7778 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | * | 4.7019 | 2.5478 | 30.4348 | 66.6667 | 4 | 153 | 7 | 16 | 14 | 87.5000 | |
| jpowers-varprowl | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 2.5492 | 0.0000 | 0.0000 | 44 | 1682 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.5751 | 0.0000 | 0.0000 | 6 | 227 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | hetalt | 0.0000 | 2.5825 | 0.0000 | 0.0000 | 18 | 679 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 2.6042 | 100.0000 | 5 | 187 | 0 | 0 | 0 | ||||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | * | 4.7196 | 2.6063 | 24.9453 | 76.2474 | 106 | 3961 | 114 | 343 | 228 | 66.4723 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | * | 4.7580 | 2.6205 | 25.8123 | 79.0152 | 131 | 4868 | 143 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | * | 4.7580 | 2.6205 | 25.8123 | 79.0152 | 131 | 4868 | 143 | 411 | 255 | 62.0438 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_11to50 | het | 4.6990 | 2.6273 | 22.2222 | 79.1506 | 16 | 593 | 24 | 84 | 48 | 57.1429 | |
| gduggal-bwavard | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.6494 | 0.0000 | 0.0000 | 98 | 3601 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | * | lowcmp_SimpleRepeat_quadTR_51to200 | hetalt | 0.0000 | 2.6778 | 0.0000 | 0.0000 | 32 | 1163 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.7027 | 0.0000 | 0.0000 | 2 | 72 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 0.0000 | 2.7027 | 0.0000 | 0.0000 | 1 | 36 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | * | HG002complexvar | hetalt | 0.0000 | 2.7305 | 0.0000 | 0.0000 | 101 | 3598 | 0 | 0 | 0 | ||
| ciseli-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_diTR_51to200 | hetalt | 0.0000 | 2.7335 | 0.0000 | 0.0000 | 12 | 427 | 0 | 0 | 0 | ||
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_merged | het | 4.9557 | 2.7624 | 24.0506 | 74.0984 | 10 | 352 | 19 | 60 | 43 | 71.6667 | |
| gduggal-snapvard | INDEL | D16_PLUS | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 5.1744 | 2.8363 | 29.4574 | 72.6502 | 101 | 3460 | 114 | 273 | 176 | 64.4689 | |
| ghariani-varprowl | INDEL | I1_5 | HG002complexvar | hetalt | 0.0000 | 2.8389 | 0.0000 | 0.0000 | 49 | 1677 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 0.0000 | 2.8571 | 0.0000 | 0.0000 | 1 | 34 | 0 | 0 | 0 | ||
| gduggal-bwavard | INDEL | D1_5 | HG002complexvar | hetalt | 0.0000 | 2.8846 | 0.0000 | 0.0000 | 39 | 1313 | 0 | 0 | 0 | ||
| gduggal-bwavard | SNP | ti | HG002complexvar | hetalt | 0.0000 | 2.8986 | 0.0000 | 0.0000 | 6 | 201 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | HG002complexvar | hetalt | 0.0000 | 2.8986 | 0.0000 | 0.0000 | 6 | 201 | 0 | 0 | 0 | ||
| jpowers-varprowl | INDEL | I1_5 | lowcmp_SimpleRepeat_diTR_51to200 | * | 5.5046 | 2.9126 | 50.0000 | 97.1429 | 6 | 200 | 1 | 1 | 1 | 100.0000 | |