PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
15951-16000 / 86044 show all
asubramanian-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
71.4286
00040
0.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
50.0000
00020
0.0000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000
asubramanian-gatkSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtimap_l250_m0_e0hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtimap_l250_m1_e0hetalt
0.0000
100.0000
04000
asubramanian-gatkSNPtisegdupwithalt*
0.0000
100.0000
00000
asubramanian-gatkSNPtisegdupwithalthet
0.0000
100.0000
00000
asubramanian-gatkSNPtisegdupwithalthetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtisegdupwithalthomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtitech_badpromotershetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvdecoy*
0.0000
100.0000
00000
asubramanian-gatkSNPtvdecoyhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvdecoyhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvdecoyhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
75.0000
00060
0.0000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
70.0000
00060
0.0000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
80.0000
00030
0.0000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
100.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
66.6667
00010
0.0000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200*
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200het
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
0.0000
0.0000
00000
asubramanian-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50hetalt
0.0000
100.0000
01000