PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
9751-9800 / 86044 show all
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
57.1429
92.0455
00432
66.6667
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_51to200hetalt
0.0000
0.0000
100.0000
95.2381
00100
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_gt200*
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_gt200het
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_diTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
0.0000
33.3333
99.9533
00120
0.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_gt10hetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_homopolymer_gt10homalt
0.0000
0.0000
33.3333
99.8458
00120
0.0000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_51to200hetalt
0.0000
0.0000
40.0000
95.0495
00232
66.6667
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_gt200*
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_gt200het
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_gt200hetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_quadTR_gt200homalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_51to200hetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_gt200*
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_gt200het
0.0000
100.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_gt200hetalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeSNPtilowcmp_SimpleRepeat_triTR_gt200homalt
0.0000
0.0000
0.0000
00000
eyeh-varpipeSNPtimap_l250_m0_e0hetalt
0.0000
0.0000
100.0000
94.3182
00500
eyeh-varpipeSNPtisegdupwithalt*
0.0000
0.0000
50.0000
99.9987
00110
0.0000
eyeh-varpipeSNPtisegdupwithalthet
0.0000
0.0000
99.9990
00010
0.0000
eyeh-varpipeSNPtisegdupwithalthetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtisegdupwithalthomalt
0.0000
0.0000
100.0000
99.9980
00100
eyeh-varpipeSNPtitech_badpromotershetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvdecoy*
0.0000
0.0000
100.0000
99.9914
00400
eyeh-varpipeSNPtvdecoyhet
0.0000
0.0000
100.0000
99.9939
00200
eyeh-varpipeSNPtvdecoyhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvdecoyhomalt
0.0000
0.0000
100.0000
99.9851
00200
eyeh-varpipeSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
91.7431
00900
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_AllRepeats_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
86.2745
00700
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhetalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhomalt
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_51to200bp_gt95identity_mergedhetalt
0.0000
0.0000
100.0000
97.6744
00100
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged*
0.0000
100.0000
00000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_mergedhet
0.0000
100.0000
00000