PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85951-86000 / 86044 show all
hfeng-pmm3INDELI16_PLUSsegduphomalt
97.4359
100.0000
95.0000
93.9024
1901910
0.0000
hfeng-pmm3INDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
100.0000
100.0000
100.0000
68.8073
6806800
jlack-gatkINDELI16_PLUSsegduphomalt
100.0000
100.0000
100.0000
94.8370
1901900
jlack-gatkINDELI6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.5507
100.0000
97.1429
69.2982
6806822
100.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
45.3608
211021110
0.0000
jli-customINDELD6_15tech_badpromotershomalt
100.0000
100.0000
100.0000
53.8462
60600
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.5915
100.0000
97.2222
85.6574
3503511
100.0000
bgallagher-sentieonINDELC1_5HG002compoundhet*
0.0000
100.0000
0.0000
0.0000
10000
bgallagher-sentieonINDELD16_PLUSmap_l125_m2_e0*
93.1034
100.0000
87.0968
96.9578
2702740
0.0000
mlin-fermikitINDELD6_15decoy*
100.0000
100.0000
100.0000
99.8962
10100
ndellapenna-hhgaINDELD16_PLUSmap_l250_m1_e0*
88.8889
100.0000
80.0000
95.6522
40410
0.0000
cchapple-customINDELI16_PLUSmap_l125_m2_e0*
96.9697
100.0000
94.1176
96.2138
1501610
0.0000
ndellapenna-hhgaINDELI6_15tech_badpromoters*
100.0000
100.0000
100.0000
59.3750
1301300
raldana-dualsentieonINDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9969
10100
raldana-dualsentieonINDELD16_PLUSmap_l250_m2_e0*
83.3333
100.0000
71.4286
95.3020
50520
0.0000
ckim-dragenINDELI1_5func_cds*
98.6301
100.0000
97.2973
39.7394
180018050
0.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
97.7528
100.0000
95.6044
85.5326
8708740
0.0000
ckim-vqsrINDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10*
0.0000
100.0000
0.0000
0.0000
10000
gduggal-bwafbSNPtitech_badpromoters*
99.4152
100.0000
98.8372
52.4862
8508510
0.0000
gduggal-bwaplatINDELI1_5lowcmp_AllRepeats_gt200bp_gt95identity_merged*
100.0000
100.0000
100.0000
99.9532
10100
hfeng-pmm2INDEL*decoy*
100.0000
100.0000
100.0000
99.9312
1001000
hfeng-pmm2INDELI16_PLUSmap_l250_m2_e1*
66.6667
100.0000
50.0000
99.1736
10110
0.0000
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
95.6098
90900
ltrigg-rtg2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
96.2963
100.0000
92.8571
99.1495
1201310
0.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
97.0588
10200
bgallagher-sentieonINDELD16_PLUSmap_l125_m2_e0het
95.2381
100.0000
90.9091
97.0549
2002020
0.0000
ndellapenna-hhgaINDELD16_PLUSmap_l250_m1_e0het
85.7143
100.0000
75.0000
94.9367
30310
0.0000
cchapple-customINDELI16_PLUSmap_l125_m2_e0het
96.2963
100.0000
92.8571
95.2703
901310
0.0000
ndellapenna-hhgaINDELI6_15tech_badpromotershet
100.0000
100.0000
100.0000
58.8235
70700
qzeng-customINDELD6_15lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
60.0000
100.0000
42.8571
97.1774
30340
0.0000
raldana-dualsentieonINDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9951
10100
ckim-dragenINDELD6_15map_l150_m1_e0het
97.5000
100.0000
95.1220
93.8806
3903920
0.0000
raldana-dualsentieonINDELD16_PLUSmap_l250_m2_e0het
75.0000
100.0000
60.0000
95.0495
30320
0.0000
ckim-dragenINDELI1_5func_cdshet
95.9350
100.0000
92.1875
52.9412
5905950
0.0000
ckim-gatkINDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
96.9697
100.0000
94.1176
88.1119
5204830
0.0000
ckim-vqsrINDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10het
0.0000
100.0000
0.0000
0.0000
10000
ckim-vqsrINDELD6_15lowcmp_SimpleRepeat_homopolymer_6to10het
100.0000
100.0000
100.0000
85.2381
155015500
ckim-vqsrINDELI16_PLUSmap_l150_m1_e0het
92.3077
100.0000
85.7143
97.0833
60610
0.0000
dgrover-gatkINDELD6_15map_l150_m1_e0het
98.7342
100.0000
97.5000
94.5055
3903910
0.0000
egarrison-hhgaINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.4359
10111
100.0000
gduggal-bwafbSNPtitech_badpromotershet
98.8764
100.0000
97.7778
57.1429
4404410
0.0000
hfeng-pmm2INDEL*decoyhet
100.0000
100.0000
100.0000
99.9394
60600
hfeng-pmm2INDELI16_PLUSmap_l250_m2_e1het
66.6667
100.0000
50.0000
98.3471
10110
0.0000
jlack-gatkINDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
99.4097
1201200
jlack-gatkSNP*lowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
94.6154
70700
jmaeng-gatkINDELI16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
100.0000
100.0000
100.0000
75.5760
5305300
ltrigg-rtg1INDEL*map_l250_m2_e0hetalt
100.0000
100.0000
100.0000
98.7013
60500
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
93.3333
10100
ltrigg-rtg1SNPtimap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
65.1163
1501500
ltrigg-rtg2INDEL*lowcmp_AllRepeats_gt200bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
98.0519
30300