PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
85651-85700 / 86044 show all | |||||||||||||||
| gduggal-snapfb | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9697 | 4 | 0 | 4 | 0 | 0 | ||
| gduggal-snapfb | SNP | tv | map_l250_m2_e0 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | map_l250_m2_e1 | hetalt | 83.3333 | 100.0000 | 71.4286 | 95.0000 | 5 | 0 | 5 | 2 | 0 | 0.0000 | |
| gduggal-snapfb | SNP | tv | segdup | hetalt | 77.7778 | 100.0000 | 63.6364 | 96.7930 | 7 | 0 | 7 | 4 | 1 | 25.0000 | |
| gduggal-snapfb | SNP | tv | tech_badpromoters | homalt | 95.1220 | 100.0000 | 90.6977 | 67.1756 | 39 | 0 | 39 | 4 | 1 | 25.0000 | |
| gduggal-snapplat | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9982 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapplat | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9975 | 1 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 70.5882 | 100.0000 | 54.5455 | 95.9410 | 6 | 0 | 6 | 5 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 98.7500 | 2 | 0 | 1 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 33.3333 | 100.0000 | 20.0000 | 96.1240 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| gduggal-snapvard | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 33.3333 | 100.0000 | 20.0000 | 95.4955 | 1 | 0 | 1 | 4 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | * | decoy | het | 92.3077 | 100.0000 | 85.7143 | 99.9761 | 6 | 0 | 6 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9196 | 3 | 0 | 3 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 98.1928 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9988 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9973 | 1 | 0 | 1 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.2925 | 6 | 0 | 6 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.4865 | 4 | 0 | 4 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1014 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | func_cds | het | 94.1176 | 100.0000 | 88.8889 | 77.5000 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.6047 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 50.0000 | 100.0000 | 33.3333 | 98.5646 | 1 | 0 | 1 | 2 | 2 | 100.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | het | 81.8182 | 100.0000 | 69.2308 | 98.4185 | 9 | 0 | 9 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5833 | 2 | 0 | 2 | 0 | 0 | ||
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | * | 93.3333 | 100.0000 | 87.5000 | 99.3226 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m0_e0 | het | 93.3333 | 100.0000 | 87.5000 | 98.8981 | 7 | 0 | 7 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m1_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.9429 | 14 | 0 | 14 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e0 | het | 88.8889 | 100.0000 | 80.0000 | 97.8094 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l150_m2_e1 | het | 88.8889 | 100.0000 | 80.0000 | 97.8237 | 16 | 0 | 16 | 4 | 1 | 25.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | * | 66.6667 | 100.0000 | 50.0000 | 99.7392 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ghariani-varprowl | INDEL | D16_PLUS | map_l250_m0_e0 | het | 66.6667 | 100.0000 | 50.0000 | 99.5565 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |