PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
85201-85250 / 86044 show all
rpoplin-dv42SNPtimap_l100_m2_e1hetalt
96.8750
100.0000
93.9394
83.9024
3103122
100.0000
rpoplin-dv42SNPtimap_l125_m0_e0hetalt
88.8889
100.0000
80.0000
86.3014
80822
100.0000
rpoplin-dv42SNPtimap_l125_m1_e0hetalt
96.0000
100.0000
92.3077
81.6901
2402422
100.0000
rpoplin-dv42SNPtimap_l125_m2_e0hetalt
96.0000
100.0000
92.3077
84.4311
2402422
100.0000
rpoplin-dv42SNPtimap_l125_m2_e1hetalt
96.0000
100.0000
92.3077
84.5238
2402422
100.0000
rpoplin-dv42SNPtimap_l150_m0_e0hetalt
85.7143
100.0000
75.0000
92.8571
30311
100.0000
rpoplin-dv42SNPtimap_l150_m1_e0hetalt
93.7500
100.0000
88.2353
85.0877
1501522
100.0000
rpoplin-dv42SNPtimap_l150_m2_e0hetalt
93.7500
100.0000
88.2353
87.3134
1501522
100.0000
rpoplin-dv42SNPtimap_l150_m2_e1hetalt
93.7500
100.0000
88.2353
87.5912
1501522
100.0000
rpoplin-dv42SNPtimap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
93.6508
40400
rpoplin-dv42SNPtimap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
93.5897
50500
rpoplin-dv42SNPtimap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
93.5897
50500
rpoplin-dv42SNPtimap_sirenhetalt
98.2759
100.0000
96.6102
78.7004
5705722
100.0000
rpoplin-dv42SNPtisegduphetalt
100.0000
100.0000
100.0000
99.2857
20200
rpoplin-dv42SNPtitech_badpromotershomalt
98.7952
100.0000
97.6190
46.1538
4104111
100.0000
rpoplin-dv42SNPtvfunc_cdshetalt
100.0000
100.0000
100.0000
60.0000
1001000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331hetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
80.0000
10100
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
75.0000
10100
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
86.6667
20200
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhetalt
100.0000
100.0000
100.0000
95.3125
30300
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhetalt
100.0000
100.0000
100.0000
92.2280
1501500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_diTR_11to50hetalt
100.0000
100.0000
100.0000
94.1176
10100
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
72.2222
50500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_11to50hetalt
100.0000
100.0000
100.0000
58.3333
50500
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_quadTR_51to200homalt
92.3077
100.0000
85.7143
92.0455
60611
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_51to200*
100.0000
100.0000
100.0000
98.5507
10100
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_51to200het
100.0000
100.0000
100.0000
98.0392
10100
rpoplin-dv42SNPtvmap_l100_m0_e0hetalt
91.4286
100.0000
84.2105
84.6774
1601633
100.0000
rpoplin-dv42SNPtvmap_l100_m1_e0hetalt
96.4706
100.0000
93.1818
83.5821
4104133
100.0000
rpoplin-dv42SNPtvmap_l100_m2_e0hetalt
96.5517
100.0000
93.3333
85.0993
4204233
100.0000
rpoplin-dv42SNPtvmap_l100_m2_e1hetalt
96.6292
100.0000
93.4783
84.9673
4304333
100.0000
rpoplin-dv42SNPtvmap_l125_m0_e0hetalt
85.7143
100.0000
75.0000
88.4615
90933
100.0000
rpoplin-dv42SNPtvmap_l125_m1_e0hetalt
95.2381
100.0000
90.9091
84.5794
3003033
100.0000
rpoplin-dv42SNPtvmap_l125_m2_e0hetalt
95.2381
100.0000
90.9091
86.5854
3003033
100.0000
rpoplin-dv42SNPtvmap_l125_m2_e1hetalt
95.2381
100.0000
90.9091
86.6397
3003033
100.0000
rpoplin-dv42SNPtvmap_l150_m0_e0hetalt
75.0000
100.0000
60.0000
94.1176
30322
100.0000
rpoplin-dv42SNPtvmap_l150_m1_e0hetalt
93.0233
100.0000
86.9565
87.1508
2002033
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e0hetalt
93.0233
100.0000
86.9565
88.7255
2002033
100.0000
rpoplin-dv42SNPtvmap_l150_m2_e1hetalt
93.0233
100.0000
86.9565
88.8889
2002033
100.0000
rpoplin-dv42SNPtvmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
95.8333
40400
rpoplin-dv42SNPtvmap_l250_m2_e0hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNPtvmap_l250_m2_e1hetalt
100.0000
100.0000
100.0000
95.8333
50500
rpoplin-dv42SNPtvmap_sirenhetalt
98.1818
100.0000
96.4286
79.8561
8108133
100.0000
rpoplin-dv42SNPtvsegduphetalt
100.0000
100.0000
100.0000
98.3834
70700
rpoplin-dv42SNPtvtech_badpromotershet
98.5075
100.0000
97.0588
39.2857
3303311
100.0000
mlin-fermikitINDELI16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
90.0000
40400
mlin-fermikitINDELI16_PLUSlowcmp_SimpleRepeat_triTR_11to50homalt
100.0000
100.0000
100.0000
78.3784
80800
mlin-fermikitINDELI16_PLUSmap_l150_m0_e0homalt
66.6667
100.0000
50.0000
81.8182
10110
0.0000