PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
84851-84900 / 86044 show all
rpoplin-dv42INDEL*segdupwithalt*
100.0000
100.0000
100.0000
99.9996
10100
rpoplin-dv42INDEL*segdupwithalthet
100.0000
100.0000
100.0000
99.9953
10100
rpoplin-dv42INDEL*tech_badpromotershet
98.7342
100.0000
97.5000
49.3671
3903911
100.0000
rpoplin-dv42INDEL*tech_badpromotershetalt
100.0000
100.0000
100.0000
50.0000
40400
rpoplin-dv42INDELC1_5*hetalt
100.0000
100.0000
10000
rpoplin-dv42INDELC1_5HG002compoundhet*
100.0000
100.0000
10000
rpoplin-dv42INDELC1_5HG002compoundhethetalt
100.0000
100.0000
10000
rpoplin-dv42INDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10*
100.0000
100.0000
10000
rpoplin-dv42INDELC1_5lowcmp_SimpleRepeat_homopolymer_6to10het
100.0000
100.0000
10000
rpoplin-dv42INDELC1_5lowcmp_SimpleRepeat_triTR_11to50*
100.0000
100.0000
10000
rpoplin-dv42INDELC1_5lowcmp_SimpleRepeat_triTR_11to50het
0.0000
100.0000
0.0000
0.0000
10000
rpoplin-dv42INDELC6_15**
100.0000
100.0000
70000
rpoplin-dv42INDELC6_15*het
100.0000
100.0000
70000
rpoplin-dv42INDELC6_15HG002complexvar*
0.0000
100.0000
0.0000
0.0000
40000
rpoplin-dv42INDELC6_15HG002complexvarhet
0.0000
100.0000
0.0000
0.0000
40000
rpoplin-dv42INDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_merged*
100.0000
100.0000
10000
rpoplin-dv42INDELC6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
100.0000
100.0000
10000
rpoplin-dv42INDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10*
0.0000
100.0000
0.0000
0.0000
10000
rpoplin-dv42INDELC6_15lowcmp_SimpleRepeat_homopolymer_gt10het
0.0000
100.0000
0.0000
0.0000
10000
rpoplin-dv42INDELD16_PLUSHG002compoundhethomalt
88.8889
100.0000
80.0000
68.7500
80822
100.0000
rpoplin-dv42INDELD16_PLUSdecoyhomalt
100.0000
100.0000
100.0000
98.0952
20200
rpoplin-dv42INDELD16_PLUSfunc_cdshomalt
100.0000
100.0000
100.0000
50.0000
40400
rpoplin-dv42INDELD16_PLUSlowcmp_AllRepeats_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.9381
10111
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_mergedhet
66.6667
100.0000
50.0000
97.8495
10111
100.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7636
100.0000
99.5283
45.6410
211021110
0.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10*
99.4286
100.0000
98.8636
79.0974
8708710
0.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10het
99.0099
100.0000
98.0392
81.6547
5205010
0.0000
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10hetalt
100.0000
100.0000
100.0000
46.1538
1201400
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_homopolymer_6to10homalt
100.0000
100.0000
100.0000
80.3419
2302300
rpoplin-dv42INDELD16_PLUSlowcmp_SimpleRepeat_triTR_51to200homalt
96.2963
100.0000
92.8571
33.3333
1301311
100.0000
rpoplin-dv42INDELD16_PLUSmap_l125_m0_e0*
100.0000
100.0000
100.0000
93.7824
1201200
rpoplin-dv42INDELD16_PLUSmap_l125_m0_e0het
100.0000
100.0000
100.0000
92.8000
90900
rpoplin-dv42INDELD16_PLUSmap_l125_m0_e0hetalt
100.0000
100.0000
100.0000
92.8571
10100
rpoplin-dv42INDELD16_PLUSmap_l125_m0_e0homalt
100.0000
100.0000
100.0000
96.2963
20200
rpoplin-dv42INDELD16_PLUSmap_l125_m1_e0hetalt
100.0000
100.0000
100.0000
84.2105
30300
rpoplin-dv42INDELD16_PLUSmap_l125_m1_e0homalt
100.0000
100.0000
100.0000
95.9596
40400
rpoplin-dv42INDELD16_PLUSmap_l125_m2_e0hetalt
100.0000
100.0000
100.0000
85.7143
30300
rpoplin-dv42INDELD16_PLUSmap_l125_m2_e0homalt
100.0000
100.0000
100.0000
96.2264
40400
rpoplin-dv42INDELD16_PLUSmap_l125_m2_e1homalt
100.0000
100.0000
100.0000
96.2264
40400
rpoplin-dv42INDELD16_PLUSmap_l150_m0_e0*
100.0000
100.0000
100.0000
95.0000
70700
rpoplin-dv42INDELD16_PLUSmap_l150_m0_e0het
100.0000
100.0000
100.0000
91.9540
70700
rpoplin-dv42INDELD16_PLUSmap_l150_m1_e0hetalt
100.0000
100.0000
100.0000
93.7500
10100
rpoplin-dv42INDELD16_PLUSmap_l150_m2_e0hetalt
100.0000
100.0000
100.0000
94.1176
10100
rpoplin-dv42INDELD16_PLUSmap_l250_m0_e0*
100.0000
100.0000
100.0000
98.5714
10100
rpoplin-dv42INDELD16_PLUSmap_l250_m0_e0het
100.0000
100.0000
100.0000
97.5610
10100
rpoplin-dv42INDELD16_PLUSmap_l250_m1_e0*
100.0000
100.0000
100.0000
96.9697
40400
rpoplin-dv42INDELD16_PLUSmap_l250_m1_e0het
100.0000
100.0000
100.0000
96.0000
30300
rpoplin-dv42INDELD16_PLUSmap_l250_m1_e0hetalt
100.0000
100.0000
100.0000
92.3077
10100
rpoplin-dv42INDELD16_PLUSmap_l250_m2_e0*
100.0000
100.0000
100.0000
96.5278
50500
rpoplin-dv42INDELD16_PLUSmap_l250_m2_e0het
100.0000
100.0000
100.0000
96.4286
30300