PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84801-84850 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | * | 66.6667 | 100.0000 | 50.0000 | 96.0784 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e0 | het | 66.6667 | 100.0000 | 50.0000 | 94.2857 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | * | 66.6667 | 100.0000 | 50.0000 | 96.1538 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | map_l250_m2_e1 | het | 66.6667 | 100.0000 | 50.0000 | 94.4444 | 1 | 0 | 1 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | het | 96.2963 | 100.0000 | 92.8571 | 94.2505 | 24 | 0 | 26 | 2 | 1 | 50.0000 | |
| ndellapenna-hhga | INDEL | I16_PLUS | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 4 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 60.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I16_PLUS | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | func_cds | * | 99.4475 | 100.0000 | 98.9011 | 31.8352 | 180 | 0 | 180 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | func_cds | het | 98.3333 | 100.0000 | 96.7213 | 35.1064 | 59 | 0 | 59 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 29.5858 | 119 | 0 | 119 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9261 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.2759 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.9246 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.0769 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 100.0000 | 100.0000 | 100.0000 | 99.9915 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.9822 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 78.5714 | 2 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.7977 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.8000 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m0_e0 | homalt | 98.7013 | 100.0000 | 97.4359 | 84.7059 | 114 | 0 | 114 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.0972 | 17 | 0 | 17 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.3452 | 19 | 0 | 19 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4606 | 19 | 0 | 19 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.9072 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m0_e0 | homalt | 99.2593 | 100.0000 | 98.5294 | 88.5714 | 67 | 0 | 67 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.9821 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.5517 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2825 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | * | 97.9592 | 100.0000 | 96.0000 | 97.8485 | 24 | 0 | 24 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | het | 96.7742 | 100.0000 | 93.7500 | 97.9747 | 15 | 0 | 15 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m0_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.1061 | 9 | 0 | 9 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.4000 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7421 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.7730 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | segdup | hetalt | 98.9899 | 100.0000 | 98.0000 | 96.1774 | 48 | 0 | 49 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 56.0000 | 22 | 0 | 22 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 42.8571 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I1_5 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 61.7647 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 24 | 0 | 24 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | I6_15 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 40.0000 | 15 | 0 | 15 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 80.0000 | 100.0000 | 66.6667 | 96.7742 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| rpoplin-dv42 | INDEL | * | map_l125_m0_e0 | hetalt | 91.6667 | 100.0000 | 84.6154 | 95.9627 | 11 | 0 | 11 | 2 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 96.1390 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m1_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 97.7564 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e0 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1333 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |
| rpoplin-dv42 | INDEL | * | map_l250_m2_e1 | hetalt | 92.3077 | 100.0000 | 85.7143 | 98.1771 | 6 | 0 | 6 | 1 | 0 | 0.0000 | |