PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84701-84750 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | * | 97.1429 | 100.0000 | 94.4444 | 92.9961 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | het | 96.9697 | 100.0000 | 94.1176 | 90.9091 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l150_m2_e1 | het | 96.9697 | 100.0000 | 94.1176 | 91.0526 | 16 | 0 | 16 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m0_e0 | * | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 97.5610 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | * | 88.8889 | 100.0000 | 80.0000 | 95.6522 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | het | 85.7143 | 100.0000 | 75.0000 | 94.9367 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | * | 90.9091 | 100.0000 | 83.3333 | 95.3125 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | het | 85.7143 | 100.0000 | 75.0000 | 95.5056 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e0 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.0588 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | * | 90.9091 | 100.0000 | 83.3333 | 95.4545 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | het | 85.7143 | 100.0000 | 75.0000 | 95.6044 | 3 | 0 | 3 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | map_l250_m2_e1 | homalt | 100.0000 | 100.0000 | 100.0000 | 97.2222 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | het | 96.2025 | 100.0000 | 92.6829 | 93.1667 | 37 | 0 | 38 | 3 | 1 | 33.3333 | |
| ndellapenna-hhga | INDEL | D16_PLUS | segdup | homalt | 96.0000 | 100.0000 | 92.3077 | 93.6585 | 12 | 0 | 12 | 1 | 1 | 100.0000 | |
| ndellapenna-hhga | INDEL | D16_PLUS | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 33.3333 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D16_PLUS | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 4 | 0 | 4 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9488 | 4 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9473 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| ndellapenna-hhga | INDEL | D1_5 | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9439 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | func_cds | * | 99.6865 | 100.0000 | 99.3750 | 33.0544 | 159 | 0 | 159 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | func_cds | het | 99.4152 | 100.0000 | 98.8372 | 37.6812 | 85 | 0 | 85 | 1 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.0000 | 74 | 0 | 74 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.2652 | 11 | 0 | 11 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.1992 | 8 | 0 | 8 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5000 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5633 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 99.3031 | 10 | 0 | 10 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.2647 | 7 | 0 | 7 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.1429 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 99.5536 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 98.4127 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.8723 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 50.0000 | 100.0000 | 33.3333 | 99.9972 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 50.0000 | 100.0000 | 33.3333 | 99.9731 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 43.4783 | 13 | 0 | 13 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.5207 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8022 | 2 | 0 | 2 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.4359 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.8261 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 3 | 0 | 3 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9932 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9890 | 1 | 0 | 1 | 0 | 0 | ||
| ndellapenna-hhga | INDEL | D1_5 | tech_badpromoters | het | 94.1176 | 100.0000 | 88.8889 | 47.0588 | 8 | 0 | 8 | 1 | 1 | 100.0000 | |