PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
84501-84550 / 86044 show all | |||||||||||||||
| raldana-dualsentieon | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.9524 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.2609 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.1667 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.3333 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 40.8451 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 56.5217 | 10 | 0 | 10 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 24.3003 | 1704 | 0 | 1704 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1485 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 44.9657 | 481 | 0 | 481 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 62.1205 | 786 | 0 | 786 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6126 | 525 | 0 | 525 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 90.9091 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 89.4737 | 2 | 0 | 2 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.1485 | 15 | 0 | 15 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 95.2381 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.2857 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 85.7143 | 100.0000 | 75.0000 | 91.1111 | 6 | 0 | 6 | 2 | 1 | 50.0000 | |
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.2456 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 97.7778 | 1 | 0 | 1 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l100_m0_e0 | hetalt | 96.9697 | 100.0000 | 94.1176 | 64.5833 | 16 | 0 | 16 | 1 | 1 | 100.0000 | |
| raldana-dualsentieon | SNP | tv | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 9 | 0 | 9 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 3 | 0 | 3 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 4 | 0 | 4 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.8049 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.0952 | 5 | 0 | 5 | 0 | 0 | ||
| raldana-dualsentieon | SNP | tv | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.2766 | 7 | 0 | 7 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8494 | 1 | 0 | 1 | 0 | 0 | ||
| rpoplin-dv42 | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9304 | 3 | 0 | 3 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | HG002compoundhet | homalt | 6.1856 | 100.0000 | 3.1915 | 36.2712 | 8 | 0 | 6 | 182 | 92 | 50.5495 | |
| qzeng-custom | INDEL | D16_PLUS | decoy | * | 62.5000 | 100.0000 | 45.4545 | 99.0196 | 6 | 0 | 5 | 6 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | decoy | het | 75.0000 | 100.0000 | 60.0000 | 99.4076 | 4 | 0 | 3 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | decoy | homalt | 50.0000 | 100.0000 | 33.3333 | 97.8417 | 2 | 0 | 2 | 4 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | * | 61.5385 | 100.0000 | 44.4444 | 64.4737 | 12 | 0 | 12 | 15 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | het | 61.5385 | 100.0000 | 44.4444 | 68.4211 | 8 | 0 | 8 | 10 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | func_cds | homalt | 61.5385 | 100.0000 | 44.4444 | 52.6316 | 4 | 0 | 4 | 5 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.8131 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 66.6667 | 100.0000 | 50.0000 | 98.7805 | 1 | 0 | 2 | 2 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 41.3223 | 100.0000 | 26.0417 | 79.7040 | 23 | 0 | 25 | 71 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 76.5217 | 100.0000 | 61.9718 | 67.8733 | 45 | 0 | 44 | 27 | 2 | 7.4074 | |
| qzeng-custom | INDEL | D16_PLUS | map_l100_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | * | 59.0909 | 100.0000 | 41.9355 | 97.7714 | 12 | 0 | 13 | 18 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | het | 60.6061 | 100.0000 | 43.4783 | 97.1357 | 9 | 0 | 10 | 13 | 0 | 0.0000 | |
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| qzeng-custom | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 54.5455 | 100.0000 | 37.5000 | 98.6395 | 2 | 0 | 3 | 5 | 0 | 0.0000 | |