PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
83101-83150 / 86044 show all | |||||||||||||||
| ltrigg-rtg2 | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 93.6709 | 6 | 0 | 5 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.5714 | 3 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | * | 98.8372 | 100.0000 | 97.7011 | 47.9042 | 85 | 0 | 85 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | het | 97.7778 | 100.0000 | 95.6522 | 52.0833 | 44 | 0 | 44 | 2 | 0 | 0.0000 | |
| ltrigg-rtg2 | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 42.2535 | 41 | 0 | 41 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 25.7516 | 1704 | 0 | 1704 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.6276 | 525 | 0 | 539 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.7273 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 72.7273 | 2 | 0 | 3 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 91.1111 | 3 | 0 | 4 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 94.1176 | 100.0000 | 88.8889 | 88.7500 | 15 | 0 | 16 | 2 | 2 | 100.0000 | |
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.8571 | 1 | 0 | 1 | 0 | 0 | ||
| ltrigg-rtg2 | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 66.6667 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 99.6785 | 100.0000 | 99.3590 | 84.8984 | 155 | 0 | 155 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 82.6291 | 74 | 0 | 74 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.1115 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.8705 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.4619 | 100.0000 | 95.0495 | 45.1087 | 192 | 0 | 192 | 10 | 9 | 90.0000 | |
| ckim-dragen | INDEL | D6_15 | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 36.3636 | 21 | 0 | 21 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | het | 95.2381 | 100.0000 | 90.9091 | 94.3005 | 20 | 0 | 20 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8421 | 5 | 0 | 5 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l150_m1_e0 | het | 97.5000 | 100.0000 | 95.1220 | 93.8806 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e0 | het | 97.8723 | 100.0000 | 95.8333 | 93.8303 | 46 | 0 | 46 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l150_m2_e1 | het | 97.9167 | 100.0000 | 95.9184 | 93.8826 | 47 | 0 | 47 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m0_e0 | het | 100.0000 | 100.0000 | 100.0000 | 98.0488 | 4 | 0 | 4 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | map_l250_m1_e0 | het | 95.6522 | 100.0000 | 91.6667 | 96.8085 | 11 | 0 | 11 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e0 | het | 96.5517 | 100.0000 | 93.3333 | 96.6443 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | map_l250_m2_e1 | het | 96.5517 | 100.0000 | 93.3333 | 96.7742 | 14 | 0 | 14 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | D6_15 | segdup | homalt | 95.2381 | 100.0000 | 90.9091 | 93.2927 | 50 | 0 | 50 | 5 | 5 | 100.0000 | |
| ckim-dragen | INDEL | D6_15 | tech_badpromoters | * | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 17 | 0 | 17 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | tech_badpromoters | het | 100.0000 | 100.0000 | 100.0000 | 47.3684 | 10 | 0 | 10 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 0.0000 | 1 | 0 | 1 | 0 | 0 | ||
| ckim-dragen | INDEL | D6_15 | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 57.1429 | 6 | 0 | 6 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | HG002complexvar | homalt | 98.8800 | 100.0000 | 97.7848 | 69.3798 | 309 | 0 | 309 | 7 | 7 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | HG002compoundhet | homalt | 6.7416 | 100.0000 | 3.4884 | 70.2422 | 3 | 0 | 3 | 83 | 83 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | func_cds | het | 100.0000 | 100.0000 | 100.0000 | 73.5294 | 9 | 0 | 9 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 88.8889 | 2 | 0 | 2 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_AllRepeats_51to200bp_gt95identity_merged | homalt | 96.1538 | 100.0000 | 92.5926 | 92.0118 | 25 | 0 | 25 | 2 | 2 | 100.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | * | 99.0826 | 100.0000 | 98.1818 | 88.6831 | 108 | 0 | 108 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 98.4615 | 100.0000 | 96.9697 | 88.5017 | 66 | 0 | 64 | 2 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.6154 | 18 | 0 | 20 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 91.0448 | 24 | 0 | 24 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 80.8396 | 178 | 0 | 178 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 81.0036 | 108 | 0 | 106 | 0 | 0 | ||
| ckim-dragen | INDEL | I16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 76.2821 | 35 | 0 | 37 | 0 | 0 | ||