PrecisionFDA
Truth Challenge
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Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
81351-81400 / 86044 show all | |||||||||||||||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 66.6667 | 100.0000 | 50.0000 | 83.3333 | 1 | 0 | 1 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 93.8776 | 8 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 92.1348 | 6 | 0 | 7 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 96.4912 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | segdup | hetalt | 100.0000 | 100.0000 | 100.0000 | 98.6667 | 2 | 0 | 2 | 0 | 0 | ||
| asubramanian-gatk | SNP | ti | tech_badpromoters | homalt | 98.7952 | 100.0000 | 97.6190 | 41.6667 | 41 | 0 | 41 | 1 | 1 | 100.0000 | |
| asubramanian-gatk | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 58.3333 | 10 | 0 | 10 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 83.3333 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 80.0000 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 67.3913 | 525 | 0 | 525 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 17.3913 | 100.0000 | 9.5238 | 78.5714 | 2 | 0 | 2 | 19 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 23.5294 | 100.0000 | 13.3333 | 80.7692 | 2 | 0 | 2 | 13 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 24.0000 | 100.0000 | 13.6364 | 80.3571 | 3 | 0 | 3 | 19 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 60.0000 | 100.0000 | 42.8571 | 84.3049 | 15 | 0 | 15 | 20 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 10.5263 | 100.0000 | 5.5556 | 80.4348 | 1 | 0 | 1 | 17 | 0 | 0.0000 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 95.3846 | 9 | 0 | 9 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.6842 | 5 | 0 | 5 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 76.9231 | 100.0000 | 62.5000 | 60.0000 | 5 | 0 | 5 | 3 | 1 | 33.3333 | |
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 100.0000 | 100.0000 | 100.0000 | 93.2584 | 6 | 0 | 6 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 100.0000 | 100.0000 | 100.0000 | 98.5714 | 1 | 0 | 1 | 0 | 0 | ||
| asubramanian-gatk | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 100.0000 | 100.0000 | 100.0000 | 98.2143 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.9337 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.9414 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8252 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9295 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | func_cds | het | 99.5392 | 100.0000 | 99.0826 | 49.7696 | 214 | 0 | 216 | 2 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | func_cds | homalt | 99.7792 | 100.0000 | 99.5595 | 38.4824 | 226 | 0 | 226 | 1 | 1 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | * | 97.5610 | 100.0000 | 95.2381 | 99.3365 | 20 | 0 | 20 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4118 | 12 | 0 | 12 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7391 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_AllRepeats_gt200bp_gt95identity_merged | homalt | 90.9091 | 100.0000 | 83.3333 | 99.4192 | 5 | 0 | 5 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | * | 97.1429 | 100.0000 | 94.4444 | 99.4067 | 17 | 0 | 17 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.4856 | 10 | 0 | 10 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.3415 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | homalt | 88.8889 | 100.0000 | 80.0000 | 99.5040 | 4 | 0 | 4 | 1 | 0 | 0.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | homalt | 99.7788 | 100.0000 | 99.5585 | 74.0995 | 1353 | 0 | 1353 | 6 | 4 | 66.6667 | |
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | * | 100.0000 | 100.0000 | 100.0000 | 97.7273 | 3 | 0 | 3 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 97.9167 | 2 | 0 | 2 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_gt200bp_gt95identity_merged | homalt | 100.0000 | 100.0000 | 100.0000 | 96.1538 | 1 | 0 | 1 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 99.8731 | 16 | 0 | 16 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9633 | 21 | 0 | 21 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8608 | 100.0000 | 99.7220 | 47.5832 | 2152 | 0 | 2152 | 6 | 6 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.9072 | 100.0000 | 94.0000 | 54.1284 | 47 | 0 | 47 | 3 | 3 | 100.0000 | |
| bgallagher-sentieon | INDEL | * | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.9541 | 11 | 0 | 11 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 94.4785 | 9 | 0 | 9 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 96.7033 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3094 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 97.3684 | 6 | 0 | 6 | 0 | 0 | ||
| bgallagher-sentieon | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9974 | 1 | 0 | 1 | 0 | 0 | ||