PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80351-80400 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | ti | map_l250_m0_e0 | homalt | 99.8833 | 100.0000 | 99.7669 | 92.9359 | 436 | 0 | 428 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l250_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8571 | 4 | 0 | 23 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.8293 | 5 | 0 | 27 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l250_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.0813 | 5 | 0 | 27 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | segdup | hetalt | 99.1597 | 100.0000 | 98.3333 | 95.5390 | 2 | 0 | 59 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | * | 88.8889 | 100.0000 | 80.0000 | 62.3656 | 85 | 0 | 84 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | het | 80.3738 | 100.0000 | 67.1875 | 68.6275 | 44 | 0 | 43 | 21 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 44.5946 | 41 | 0 | 41 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.8571 | 10 | 0 | 18 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 26.3664 | 1704 | 0 | 1684 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.7015 | 100.0000 | 99.4048 | 74.4681 | 13 | 0 | 334 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | het | 91.4222 | 100.0000 | 84.1998 | 71.2990 | 855 | 0 | 826 | 155 | 3 | 1.9355 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | het | 93.5518 | 100.0000 | 87.8849 | 70.8431 | 1387 | 0 | 1313 | 181 | 3 | 1.6575 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 13 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 94.4475 | 100.0000 | 89.4792 | 73.5318 | 914 | 0 | 859 | 101 | 1 | 0.9901 | |
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 87.5000 | 1 | 0 | 8 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 81.8841 | 2 | 0 | 50 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 79.4979 | 2 | 0 | 49 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 86.9478 | 3 | 0 | 65 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 99.3243 | 100.0000 | 98.6577 | 87.6860 | 15 | 0 | 147 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 64.9123 | 1 | 0 | 160 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 99.1150 | 100.0000 | 98.2456 | 80.1394 | 5 | 0 | 56 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 99.3289 | 100.0000 | 98.6667 | 70.3557 | 5 | 0 | 74 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 41.6667 | 100.0000 | 26.3158 | 76.2500 | 6 | 0 | 5 | 14 | 4 | 28.5714 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 53.5354 | 1 | 0 | 46 | 0 | 0 | ||
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | * | 50.0000 | 100.0000 | 33.3333 | 94.5455 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | lowcmp_SimpleRepeat_triTR_51to200 | het | 50.0000 | 100.0000 | 33.3333 | 92.8571 | 1 | 0 | 1 | 2 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m0_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 74.1036 | 16 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m1_e0 | hetalt | 99.3548 | 100.0000 | 98.7179 | 69.3517 | 41 | 0 | 154 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e0 | hetalt | 99.3865 | 100.0000 | 98.7805 | 70.8703 | 42 | 0 | 162 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l100_m2_e1 | hetalt | 99.4012 | 100.0000 | 98.8095 | 70.6294 | 43 | 0 | 166 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m0_e0 | hetalt | 98.7342 | 100.0000 | 97.5000 | 78.2609 | 9 | 0 | 39 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m1_e0 | hetalt | 99.4872 | 100.0000 | 98.9796 | 72.3944 | 30 | 0 | 97 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e0 | hetalt | 99.5349 | 100.0000 | 99.0741 | 73.5941 | 30 | 0 | 107 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l125_m2_e1 | hetalt | 99.5392 | 100.0000 | 99.0826 | 73.6715 | 30 | 0 | 108 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m0_e0 | hetalt | 98.0392 | 100.0000 | 96.1538 | 81.9444 | 3 | 0 | 25 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m1_e0 | hetalt | 99.2248 | 100.0000 | 98.4615 | 76.1905 | 20 | 0 | 64 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 77.3885 | 20 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l150_m2_e1 | hetalt | 99.3103 | 100.0000 | 98.6301 | 77.1875 | 20 | 0 | 72 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m1_e0 | hetalt | 96.7742 | 100.0000 | 93.7500 | 88.5714 | 4 | 0 | 15 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e0 | hetalt | 97.4359 | 100.0000 | 95.0000 | 87.7301 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | map_l250_m2_e1 | hetalt | 97.4359 | 100.0000 | 95.0000 | 88.0952 | 5 | 0 | 19 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | segdup | hetalt | 98.8764 | 100.0000 | 97.7778 | 95.6438 | 7 | 0 | 44 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | * | 78.6517 | 100.0000 | 64.8148 | 71.8750 | 72 | 0 | 70 | 38 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | het | 63.4615 | 100.0000 | 46.4789 | 76.6447 | 33 | 0 | 33 | 38 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | tv | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 53.7500 | 39 | 0 | 37 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | decoy | hetalt | 100.0000 | 100.0000 | 1 | 0 | 0 | 0 | 0 | ||||
| gduggal-bwafb | INDEL | * | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.9253 | 3 | 0 | 3 | 0 | 0 | ||
| gduggal-bwafb | INDEL | * | lowcmp_SimpleRepeat_homopolymer_gt10 | homalt | 81.6327 | 100.0000 | 68.9655 | 99.9497 | 21 | 0 | 20 | 9 | 9 | 100.0000 | |