PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
80301-80350 / 86044 show all | |||||||||||||||
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | het | 76.9231 | 100.0000 | 62.5000 | 97.5904 | 7 | 0 | 5 | 3 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 33.3333 | 100.0000 | 20.0000 | 91.8033 | 2 | 0 | 1 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m0_e0 | hetalt | 99.6016 | 100.0000 | 99.2063 | 70.4918 | 16 | 0 | 125 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m1_e0 | hetalt | 99.6622 | 100.0000 | 99.3266 | 65.7044 | 41 | 0 | 295 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e0 | hetalt | 99.6753 | 100.0000 | 99.3528 | 67.7116 | 42 | 0 | 307 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l100_m2_e1 | hetalt | 99.6805 | 100.0000 | 99.3631 | 67.6289 | 43 | 0 | 312 | 2 | 1 | 50.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m0_e0 | hetalt | 99.2908 | 100.0000 | 98.5915 | 76.4120 | 9 | 0 | 70 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m1_e0 | hetalt | 99.7260 | 100.0000 | 99.4536 | 69.3980 | 30 | 0 | 182 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | hetalt | 99.7442 | 100.0000 | 99.4898 | 71.2188 | 30 | 0 | 195 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | hetalt | 99.7481 | 100.0000 | 99.4975 | 71.0756 | 30 | 0 | 198 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m0_e0 | hetalt | 98.9474 | 100.0000 | 97.9167 | 79.8319 | 3 | 0 | 47 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m1_e0 | hetalt | 99.5781 | 100.0000 | 99.1597 | 73.6142 | 20 | 0 | 118 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e0 | hetalt | 99.6078 | 100.0000 | 99.2188 | 75.1456 | 20 | 0 | 127 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l150_m2_e1 | hetalt | 99.6139 | 100.0000 | 99.2308 | 75.0480 | 20 | 0 | 129 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m1_e0 | hetalt | 98.1132 | 100.0000 | 96.2963 | 87.5000 | 4 | 0 | 26 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e0 | hetalt | 98.3607 | 100.0000 | 96.7742 | 87.6984 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | map_l250_m2_e1 | hetalt | 98.3607 | 100.0000 | 96.7742 | 88.0309 | 5 | 0 | 30 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | segdup | hetalt | 99.3197 | 100.0000 | 98.6486 | 95.3371 | 7 | 0 | 73 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | * | tech_badpromoters | * | 83.8356 | 100.0000 | 72.1698 | 67.3846 | 157 | 0 | 153 | 59 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | tech_badpromoters | het | 72.0379 | 100.0000 | 56.2963 | 72.9459 | 77 | 0 | 76 | 59 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 48.6667 | 80 | 0 | 77 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | func_cds | hetalt | 100.0000 | 100.0000 | 100.0000 | 57.6923 | 8 | 0 | 33 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_AllRepeats_lt51bp_gt95identity_merged | hetalt | 99.0228 | 100.0000 | 98.0645 | 81.3926 | 6 | 0 | 152 | 3 | 2 | 66.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | hetalt | 98.2206 | 100.0000 | 96.5035 | 90.6168 | 12 | 0 | 138 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 84.2105 | 1 | 0 | 12 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 82.0513 | 1 | 0 | 7 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged | hetalt | 90.4762 | 100.0000 | 82.6087 | 90.4959 | 1 | 0 | 19 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged | hetalt | 96.7742 | 100.0000 | 93.7500 | 90.1840 | 1 | 0 | 15 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged | hetalt | 94.4444 | 100.0000 | 89.4737 | 92.8972 | 2 | 0 | 34 | 4 | 3 | 75.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | hetalt | 98.2206 | 100.0000 | 96.5035 | 90.6168 | 12 | 0 | 138 | 5 | 4 | 80.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 85.8696 | 1 | 0 | 52 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_diTR_51to200 | homalt | 62.5000 | 100.0000 | 45.4545 | 82.5397 | 6 | 0 | 5 | 6 | 1 | 16.6667 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 98.4127 | 100.0000 | 96.8750 | 65.5914 | 2 | 0 | 31 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | hetalt | 98.0392 | 100.0000 | 96.1538 | 79.7665 | 1 | 0 | 50 | 2 | 2 | 100.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_11to50 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.4286 | 1 | 0 | 14 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | * | 66.6667 | 100.0000 | 50.0000 | 97.1264 | 8 | 0 | 5 | 5 | 1 | 20.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | het | 88.8889 | 100.0000 | 80.0000 | 98.2818 | 6 | 0 | 4 | 1 | 0 | 0.0000 | |
| eyeh-varpipe | SNP | ti | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 33.3333 | 100.0000 | 20.0000 | 90.3846 | 2 | 0 | 1 | 4 | 1 | 25.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 68.8705 | 14 | 0 | 113 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l100_m1_e0 | hetalt | 99.8088 | 100.0000 | 99.6183 | 63.7119 | 29 | 0 | 261 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e0 | hetalt | 99.8165 | 100.0000 | 99.6337 | 65.9176 | 30 | 0 | 272 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l100_m2_e1 | hetalt | 99.8192 | 100.0000 | 99.6390 | 65.8025 | 31 | 0 | 276 | 1 | 1 | 100.0000 | |
| eyeh-varpipe | SNP | ti | map_l125_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 75.0988 | 8 | 0 | 63 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 67.5456 | 24 | 0 | 160 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.4885 | 24 | 0 | 173 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l125_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 24 | 0 | 176 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m0_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 78.1726 | 3 | 0 | 43 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m1_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 71.8157 | 15 | 0 | 104 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m2_e0 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.2861 | 15 | 0 | 113 | 0 | 0 | ||
| eyeh-varpipe | SNP | ti | map_l150_m2_e1 | hetalt | 100.0000 | 100.0000 | 100.0000 | 73.0679 | 15 | 0 | 115 | 0 | 0 | ||