PrecisionFDA
Truth Challenge
Engage and improve DNA test results with our community challenges
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
77651-77700 / 86044 show all | |||||||||||||||
| jlack-gatk | INDEL | * | map_l150_m0_e0 | hetalt | 94.7368 | 100.0000 | 90.0000 | 94.8187 | 9 | 0 | 9 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | map_l250_m0_e0 | homalt | 98.0392 | 100.0000 | 96.1538 | 97.3604 | 25 | 0 | 25 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | * | segdupwithalt | * | 100.0000 | 100.0000 | 100.0000 | 99.9981 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | * | segdupwithalt | het | 100.0000 | 100.0000 | 100.0000 | 99.9975 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | * | tech_badpromoters | * | 98.7013 | 100.0000 | 97.4359 | 53.2934 | 76 | 0 | 76 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | het | 97.5000 | 100.0000 | 95.1220 | 50.6024 | 39 | 0 | 39 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | * | tech_badpromoters | hetalt | 100.0000 | 100.0000 | 100.0000 | 50.0000 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | * | tech_badpromoters | homalt | 100.0000 | 100.0000 | 100.0000 | 56.5789 | 33 | 0 | 33 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | * | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | HG002compoundhet | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | HG002compoundhet | hetalt | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C1_5 | lowcmp_SimpleRepeat_triTR_11to50 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | * | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | * | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 7 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | HG002complexvar | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | HG002complexvar | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 4 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | lowcmp_AllRepeats_lt51bp_gt95identity_merged | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | * | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | C6_15 | lowcmp_SimpleRepeat_homopolymer_gt10 | het | 0.0000 | 100.0000 | 0.0000 | 0.0000 | 1 | 0 | 0 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | HG002compoundhet | homalt | 55.1724 | 100.0000 | 38.0952 | 66.6667 | 8 | 0 | 8 | 13 | 13 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | decoy | * | 100.0000 | 100.0000 | 100.0000 | 99.5617 | 6 | 0 | 6 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | decoy | het | 100.0000 | 100.0000 | 100.0000 | 99.6451 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | decoy | homalt | 100.0000 | 100.0000 | 100.0000 | 99.0654 | 2 | 0 | 2 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | func_cds | * | 96.0000 | 100.0000 | 92.3077 | 81.9444 | 12 | 0 | 12 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | func_cds | het | 94.1176 | 100.0000 | 88.8889 | 84.7458 | 8 | 0 | 8 | 1 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | func_cds | homalt | 100.0000 | 100.0000 | 100.0000 | 69.2308 | 4 | 0 | 4 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8224 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_AllRepeats_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 93.3333 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | het | 100.0000 | 100.0000 | 100.0000 | 99.8172 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_gt200bp_gt95identity_merged | hetalt | 100.0000 | 100.0000 | 100.0000 | 92.3077 | 1 | 0 | 1 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | hetalt | 100.0000 | 100.0000 | 100.0000 | 54.2857 | 12 | 0 | 16 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 100.0000 | 100.0000 | 100.0000 | 83.0882 | 23 | 0 | 23 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_11to50 | homalt | 99.7831 | 100.0000 | 99.5671 | 71.3400 | 230 | 0 | 230 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_quadTR_51to200 | homalt | 97.1429 | 100.0000 | 94.4444 | 62.8866 | 102 | 0 | 102 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 100.0000 | 100.0000 | 100.0000 | 63.7097 | 45 | 0 | 45 | 0 | 0 | ||
| jlack-gatk | INDEL | D16_PLUS | lowcmp_SimpleRepeat_triTR_51to200 | homalt | 96.2963 | 100.0000 | 92.8571 | 46.1538 | 13 | 0 | 13 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | het | 90.0000 | 100.0000 | 81.8182 | 97.4359 | 9 | 0 | 9 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m0_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 96.8750 | 2 | 0 | 2 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m1_e0 | homalt | 88.8889 | 100.0000 | 80.0000 | 97.3684 | 4 | 0 | 4 | 1 | 1 | 100.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e0 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.2603 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l125_m2_e1 | homalt | 80.0000 | 100.0000 | 66.6667 | 97.3333 | 4 | 0 | 4 | 2 | 1 | 50.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | * | 82.3529 | 100.0000 | 70.0000 | 97.4937 | 7 | 0 | 7 | 3 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m0_e0 | het | 87.5000 | 100.0000 | 77.7778 | 97.1338 | 7 | 0 | 7 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m1_e0 | het | 93.3333 | 100.0000 | 87.5000 | 96.9697 | 14 | 0 | 14 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e0 | het | 94.1176 | 100.0000 | 88.8889 | 97.1061 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |
| jlack-gatk | INDEL | D16_PLUS | map_l150_m2_e1 | het | 94.1176 | 100.0000 | 88.8889 | 97.1338 | 16 | 0 | 16 | 2 | 0 | 0.0000 | |