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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1539 1540 1541 1542 1543 1544 1545 1546 1547 ... 1720 1721 » 77101-77150 / 86044 show all
gduggal-bwafb	SNP	*	func_cds	*	99.6211	99.9504	99.2939	30.1552	18141	9	18141	129	2	1.5504
bgallagher-sentieon	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7043	99.9506	99.4592	57.8271	6069	3	6069	33	32	96.9697
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7617	99.9506	99.5734	57.9016	6069	3	6069	26	25	96.1538
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7781	99.9506	99.6061	57.9561	6069	3	6069	24	23	95.8333
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9425	99.9507	99.9343	54.5644	6085	3	6088	4	4	100.0000
jlack-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9343	99.9507	99.9179	54.3410	6085	3	6085	5	5	100.0000
hfeng-pmm1	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9589	99.9507	99.9671	54.6457	6085	3	6085	2	2	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9361	99.9509	99.9214	54.3780	10173	5	10173	8	8	100.0000
jlack-gatk	SNP	*	*	homalt	99.9692	99.9511	99.9872	17.3366	1179584	577	1179556	151	96	63.5762
bgallagher-sentieon	SNP	ti	HG002complexvar	homalt	99.9695	99.9514	99.9876	18.3190	193369	94	193359	24	24	100.0000
ltrigg-rtg2	SNP	*	*	homalt	99.9694	99.9515	99.9872	17.0159	1179585	572	1179505	151	139	92.0530
ckim-dragen	SNP	*	*	het	99.7355	99.9519	99.5199	24.5349	1872686	901	1873038	9035	444	4.9142
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7221	99.9521	99.4931	42.7028	6265	3	6281	32	9	28.1250
jlack-gatk	SNP	ti	*	homalt	99.9698	99.9522	99.9874	15.9699	802654	384	802644	101	66	65.3465
ckim-dragen	SNP	*	*	*	99.8268	99.9524	99.7015	21.8489	3053166	1453	3053731	9143	533	5.8296
jli-custom	SNP	tv	*	*	99.9049	99.9528	99.8570	21.1774	969232	458	969166	1388	83	5.9798
ltrigg-rtg2	SNP	ti	*	homalt	99.9701	99.9529	99.9873	15.8538	802658	378	802554	102	98	96.0784
jli-custom	SNP	ti	func_cds	het	99.8825	99.9530	99.8121	22.8972	8500	4	8500	16	0	0.0000
hfeng-pmm1	SNP	ti	func_cds	het	99.9060	99.9530	99.8590	22.2902	8500	4	8498	12	0	0.0000
hfeng-pmm3	SNP	ti	func_cds	het	99.9001	99.9530	99.8473	22.7326	8500	4	8498	13	0	0.0000
gduggal-bwafb	SNP	ti	func_cds	het	99.4792	99.9530	99.0099	30.9221	8500	4	8500	85	2	2.3529
bgallagher-sentieon	INDEL	D1_5	*	homalt	99.7512	99.9530	99.5502	62.3527	48903	23	48908	221	219	99.0950
rpoplin-dv42	SNP	ti	HG002complexvar	homalt	99.9574	99.9530	99.9617	18.4113	193372	91	193367	74	72	97.2973
rpoplin-dv42	SNP	ti	func_cds	het	99.9236	99.9530	99.8942	23.9564	8500	4	8498	9	2	22.2222
ndellapenna-hhga	SNP	ti	func_cds	het	99.9118	99.9530	99.8708	22.7256	8500	4	8500	11	0	0.0000
gduggal-snapfb	SNP	ti	func_cds	het	99.6775	99.9530	99.4036	28.0582	8500	4	8500	51	1	1.9608
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.8363	99.9532	99.7196	42.4576	2137	1	2134	6	2	33.3333
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.9532	99.9532	99.9531	38.2523	2137	1	2133	1	1	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.5336	99.9532	99.1175	38.8352	2137	1	2134	19	2	10.5263
ckim-dragen	SNP	*	*	homalt	99.9725	99.9534	99.9917	17.1093	1179611	550	1179821	98	80	81.6327
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9071	99.9535	99.8607	47.4506	2151	1	2151	3	3	100.0000
hfeng-pmm3	SNP	*	segdup	homalt	99.9395	99.9535	99.9256	88.8624	10738	5	10738	8	8	100.0000
hfeng-pmm1	SNP	*	segdup	homalt	99.9256	99.9535	99.8977	88.8973	10738	5	10738	11	11	100.0000
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9303	99.9535	99.9071	44.5246	2151	1	2151	2	2	100.0000
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8839	99.9535	99.8144	47.5030	2151	1	2151	4	4	100.0000
ckim-dragen	SNP	ti	*	*	99.8327	99.9538	99.7120	20.2602	2084547	964	2084816	6022	378	6.2770
jli-custom	SNP	ti	*	het	99.9331	99.9539	99.9123	17.4772	1281300	591	1281266	1125	87	7.7333
gduggal-snapfb	SNP	tv	func_cds	*	99.4084	99.9542	98.8685	34.6495	4369	2	4369	50	0	0.0000
gduggal-bwafb	SNP	tv	func_cds	*	99.4763	99.9542	99.0029	37.0021	4369	2	4369	44	0	0.0000
hfeng-pmm1	SNP	tv	func_cds	*	99.9314	99.9542	99.9085	27.9499	4369	2	4368	4	0	0.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6721	99.9543	99.3915	75.2467	21889	10	21889	134	133	99.2537
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9319	99.9546	99.9092	41.8384	2200	1	2200	2	2	100.0000
cchapple-custom	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8863	99.9546	99.8181	38.5067	2200	1	2195	4	2	50.0000
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9319	99.9546	99.9092	41.9457	2200	1	2200	2	2	100.0000
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9319	99.9546	99.9092	41.9151	2200	1	2200	2	2	100.0000
ghariani-varprowl	SNP	tv	*	homalt	99.6533	99.9547	99.3538	23.4817	376950	171	377023	2452	1194	48.6949
astatham-gatk	SNP	*	*	homalt	99.9742	99.9548	99.9936	17.1971	1179627	534	1179603	76	67	88.1579
jli-custom	SNP	*	func_cds	het	99.8568	99.9552	99.7586	24.6835	11156	5	11156	27	0	0.0000
ndellapenna-hhga	SNP	*	func_cds	het	99.9060	99.9552	99.8568	24.2730	11156	5	11156	16	0	0.0000

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