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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76951-77000 / 86044 show all
jmaeng-gatkSNP*func_cdshet
99.1816
99.9283
98.4461
36.9727
111538111501761
0.5682
ltrigg-rtg2SNP*func_cdshomalt
99.9642
99.9284
100.0000
21.6932
69745697400
astatham-gatkSNP*func_cdshomalt
99.9642
99.9284
100.0000
20.9745
69745697400
jmaeng-gatkINDELD1_5*homalt
99.7928
99.9285
99.6576
62.5365
488913548898168166
98.8095
ckim-vqsrINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9026
99.9292
99.8761
56.3916
112888112881413
92.8571
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9159
99.9292
99.9026
55.9613
112888112881110
90.9091
jlack-gatkSNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.8949
99.9299
99.8599
26.8443
14261142622
100.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9299
99.9299
99.9299
28.6857
14261142611
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
23.7460
14261142811
100.0000
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_triTR_11to50homalt
99.9300
99.9299
99.9300
24.2713
14261142811
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7920
99.9306
99.6537
69.7338
14391143950
0.0000
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.0024
99.9306
98.0913
69.9262
143911439281
3.5714
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6883
99.9306
99.4471
68.6661
14391143980
0.0000
ckim-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7574
99.9306
99.5848
69.2619
14391143960
0.0000
ckim-dragenSNPtvHG002complexvarhomalt
99.9600
99.9306
99.9895
22.9484
9504566951481010
100.0000
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6537
99.9306
99.3785
69.0135
14391143990
0.0000
hfeng-pmm1SNPti**
99.9548
99.9307
99.9789
16.7547
20840651446208400744067
15.2273
hfeng-pmm2SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9505
99.9307
99.9703
51.1679
1009571009532
66.6667
jli-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9307
99.9505
49.4545
1009571009553
60.0000
jpowers-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.9694
99.9307
96.0837
66.5958
10090710108412277
67.2330
raldana-dualsentieonSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9307
99.9604
55.9950
20185142018588
100.0000
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9312
99.9116
54.3329
1017171016799
100.0000
bgallagher-sentieonSNPtvHG002complexvar*
99.9492
99.9313
99.9671
22.0213
2459831692458928131
38.2716
rpoplin-dv42SNPtvfunc_cds*
99.9199
99.9314
99.9085
29.6249
43683436741
25.0000
jli-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.8267
99.9315
99.7221
75.0916
2188415218886159
96.7213
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.7061
99.9315
99.4818
75.9939
218841521884114113
99.1228
jmaeng-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6721
99.9315
99.4140
76.0962
218841521884129128
99.2248
ckim-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.6970
99.9315
99.4637
76.0277
218841521884118117
99.1525
jlack-gatkSNPti*het
99.6581
99.9316
99.3861
24.9292
128101487712809607913288
3.6396
raldana-dualsentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.4822
99.9317
99.0367
73.5845
307402130740299294
98.3278
bgallagher-sentieonINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.3343
99.9317
98.7440
74.3514
307402130740391384
98.2097
bgallagher-sentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
42.9072
14651146500
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9318
99.9318
99.9318
43.0237
14651146511
100.0000
hfeng-pmm1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
45.7608
14651146500
ghariani-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.9871
99.9318
98.0602
53.4268
1465114662919
65.5172
raldana-dualsentieonSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
43.3050
14651146500
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
43.5670
14651146500
jpowers-varprowlSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
98.7538
99.9318
97.6032
55.4303
1465114663619
52.7778
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.9659
99.9318
100.0000
43.8267
14651146500
jlack-gatkSNP**het
99.5639
99.9321
99.1985
27.0831
18723151272187219015127441
2.9153
jli-customSNPtiHG002compoundhethomalt
99.9121
99.9324
99.8918
30.7138
73895738988
100.0000
jlack-gatkSNPtv*het
99.3606
99.9332
98.7945
31.3268
5913013955912307214153
2.1209
bgallagher-sentieonSNP*HG002complexvar*
99.9538
99.9332
99.9744
19.0217
75387750475372219384
43.5233
ltrigg-rtg1SNPtisegduphomalt
99.7604
99.9334
99.5880
88.0751
7500574943131
100.0000
ghariani-varprowlSNPtisegduphomalt
99.5818
99.9334
99.2326
88.7647
7500575005836
62.0690
bgallagher-sentieonSNPtiHG002complexvar*
99.9558
99.9337
99.9780
17.4939
50809933750803511253
47.3214
ghariani-varprowlSNPtvHG002complexvarhomalt
99.3856
99.9338
98.8434
25.4168
9504863951211113736
66.1276
hfeng-pmm3SNP***
99.9548
99.9339
99.9756
18.3516
30526012018305246074476
10.2151
hfeng-pmm2SNPti**
99.9484
99.9340
99.9629
17.4396
20841351376208407777472
9.3023
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.7452
99.9341
99.5570
56.8831
6068460682727
100.0000