PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Challenge Closed
View Responses
Explore HG002 comparison results
Use this interactive explorer to filter all results across submission entries and multiple dimensions.
Reset
EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76901-76950 / 86044 show all
ckim-dragenSNPtiHG002complexvar*
99.9317
99.9245
99.9389
17.8695
508052384508287311156
50.1608
dgrover-gatkINDELD1_5HG002complexvarhomalt
99.8963
99.9245
99.8680
60.1555
105908105951412
85.7143
gduggal-bwafbSNPtvfunc_cdshet
99.1412
99.9247
98.3698
41.4914
265522655440
0.0000
gduggal-snapfbSNPtvfunc_cdshet
99.0857
99.9247
98.2605
37.4682
265522655470
0.0000
hfeng-pmm1SNPtvfunc_cdshet
99.8871
99.9247
99.8495
28.9115
26552265440
0.0000
rpoplin-dv42SNPtvfunc_cdshet
99.8871
99.9247
99.8495
30.5098
26552265441
25.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9248
99.9248
99.9248
37.2719
39843398433
100.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.3890
39843398422
100.0000
cchapple-customSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9498
99.9248
99.9749
29.7121
39843397811
100.0000
jlack-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50homalt
99.9373
99.9248
99.9498
33.7544
39843398421
50.0000
hfeng-pmm2SNP***
99.9416
99.9254
99.9579
18.8175
3052339228030522021287114
8.8578
jli-customSNPtvHG002complexvarhomalt
99.9542
99.9254
99.9832
22.8543
9504071950291611
68.7500
bgallagher-sentieonINDELI1_5HG002complexvarhomalt
99.8440
99.9256
99.7625
52.9997
1343810134433231
96.8750
dgrover-gatkINDELI1_5HG002complexvarhomalt
99.8663
99.9256
99.8070
53.0009
1343810134432625
96.1538
hfeng-pmm2SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9480
99.9257
99.9703
57.5983
20184152018465
83.3333
jlack-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9333
99.9259
99.9407
34.6955
67405674043
75.0000
hfeng-pmm3SNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9407
99.9259
99.9555
36.4048
67405674033
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.9481
99.9259
99.9703
34.6642
67405674022
100.0000
dgrover-gatkSNP*HG002complexvar*
99.9517
99.9260
99.9773
19.0606
75382355875366817188
51.4620
ckim-dragenINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7413
99.9261
99.5572
74.4050
13521134964
66.6667
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7418
99.9261
99.5582
73.6157
13521135263
50.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9261
99.9261
99.9261
72.6113
13521135210
0.0000
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9262
99.9262
45.5021
40623406233
100.0000
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8403
99.9262
99.7545
48.2662
406234063102
20.0000
cchapple-customSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.8769
99.9262
99.8277
45.6225
40623405571
14.2857
ckim-dragenSNPtiHG002complexvarhet
99.9189
99.9266
99.9111
17.5776
314535231314661280125
44.6429
ckim-dragenSNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.9175
99.9267
99.9084
60.9850
10903810906102
20.0000
dgrover-gatkSNPtiHG002complexvar*
99.9530
99.9268
99.9791
17.5262
50806437250800010656
52.8302
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
jli-customSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.9710
27362273611
100.0000
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.1349
27362273611
100.0000
raldana-dualsentieonSNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
30.8140
27362273611
100.0000
hfeng-pmm1SNP*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9452
99.9270
99.9635
32.6526
27362273611
100.0000
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
37.0751
27562275622
100.0000
jlack-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.0093
27562275622
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.2312
27562275622
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9275
99.9275
99.9275
36.3783
27562275622
100.0000
rpoplin-dv42SNPtv*het
99.9398
99.9275
99.9522
22.4174
591267429591187283104
36.7491
ckim-dragenSNPtvlowcmp_SimpleRepeat_quadTR_11to50homalt
99.9637
99.9275
100.0000
36.4245
27562275600
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
56.9470
13821138200
asubramanian-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.7474
99.9277
99.5677
58.0918
13821138260
0.0000
ghariani-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.8939
99.9277
97.8814
65.9861
1382113863018
60.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
57.3061
13821138200
mlin-fermikitSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.7513
99.9277
97.6023
62.0856
1382113843431
91.1765
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
57.4376
13821138200
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
98.9292
99.9277
97.9505
67.9429
1382113862918
62.0690
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhomalt
99.9638
99.9277
100.0000
58.3062
13821140800
rpoplin-dv42SNP**het
99.9475
99.9278
99.9673
19.5765
187223413531872094613268
43.7194
rpoplin-dv42SNPti*het
99.9511
99.9279
99.9742
18.1937
12809679241280907330164
49.6970
ckim-gatkSNP*func_cdshet
99.5225
99.9283
99.1199
36.5539
11153811150991
1.0101