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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76851-76900 / 86044 show all
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.7998
99.9198
99.6800
62.5636
24922249280
0.0000
rpoplin-dv42SNPtvHG002complexvarhomalt
99.9385
99.9201
99.9569
22.8530
9503576950114137
90.2439
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9202
99.9202
99.9202
44.4375
62635626353
60.0000
cchapple-customSNPtifunc_cds*
99.8586
99.9202
99.7971
24.6780
137761113774281
3.5714
ckim-dragenSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.8565
99.9202
99.7929
46.2638
626356265135
38.4615
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9202
99.9362
44.6182
62635626343
75.0000
ckim-vqsrINDELD1_5*homalt
99.7969
99.9203
99.6738
62.4858
488873948894160157
98.1250
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
97.4618
99.9203
95.1213
59.6779
376333763193190
98.4456
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
97.4618
99.9203
95.1213
59.6779
376333763193190
98.4456
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.1994
99.9203
96.5367
59.9507
376333763135133
98.5185
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.1994
99.9203
96.5367
59.9507
376333763135133
98.5185
raldana-dualsentieonSNPti**
99.9357
99.9205
99.9510
17.0225
208385316582083794102254
5.2838
ghariani-varprowlSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.8554
99.9208
95.8736
65.4859
10089810107435273
62.7586
hfeng-pmm3SNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9406
99.9208
99.9604
49.7187
1009481009443
75.0000
hfeng-pmm2SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9455
99.9208
99.9703
62.5348
1008981008933
100.0000
ckim-dragenSNP*HG002complexvarhet
99.9146
99.9212
99.9081
19.1598
465130367465401428195
45.5607
ckim-dragenSNPtiHG002complexvarhomalt
99.9527
99.9214
99.9840
18.3095
1933111521934173131
100.0000
rpoplin-dv42INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9214
99.9214
99.9214
54.3038
1017081016988
100.0000
rpoplin-dv42SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.8821
99.9214
99.8429
48.2941
25422254240
0.0000
astatham-gatkSNPtiHG002complexvarhomalt
99.9545
99.9214
99.9876
18.3169
1933111521933012424
100.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9312
99.9214
99.9410
54.0442
1017081017066
100.0000
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9116
99.9214
99.9018
54.3272
101708101701010
100.0000
astatham-gatkINDEL*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5289
99.9220
99.1388
74.4236
307372430737267261
97.7528
ckim-dragenSNP*HG002complexvar*
99.9301
99.9223
99.9379
19.4552
753795586754278469236
50.3198
dgrover-gatkINDEL*HG002complexvarhomalt
99.7765
99.9223
99.6312
57.3581
27006212701610096
96.0000
ckim-vqsrSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8325
99.9226
99.7426
60.4661
387533875100
0.0000
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8583
99.9226
99.7940
60.8923
38753387580
0.0000
ckim-dragenSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8842
99.9226
99.8459
59.1543
38753388762
33.3333
hfeng-pmm1SNP***
99.9496
99.9227
99.9766
18.0950
305225723623052118715107
14.9650
jlack-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3004
38843388422
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3897
38843388422
100.0000
bgallagher-sentieonSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9357
99.9228
99.9485
59.3344
38843388422
100.0000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9614
99.9228
100.0000
59.5375
38843388400
cchapple-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9485
99.9228
99.9742
56.3906
38843387510
0.0000
jpowers-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.1961
99.9228
98.4799
61.8721
3884338876046
76.6667
jli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9228
99.9228
99.9228
59.2856
38843388432
66.6667
ghariani-varprowlSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
98.7801
99.9228
97.6633
61.6275
3884338879346
49.4624
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8465
99.9232
99.7699
29.4425
39033390291
11.1111
bgallagher-sentieonSNPtiHG002complexvarhet
99.9477
99.9234
99.9720
16.9632
3145252413144718829
32.9545
bgallagher-sentieonSNP*HG002complexvarhet
99.9449
99.9235
99.9662
18.4844
46514135646501115750
31.8471
dgrover-gatkSNPtvHG002complexvar*
99.9486
99.9236
99.9736
22.0729
2459641882458736532
49.2308
bgallagher-sentieonSNPtvHG002complexvarhet
99.9389
99.9237
99.9542
21.4883
1506161151505406921
30.4348
hfeng-pmm2SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
35.8158
13101131000
hfeng-pmm3SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
34.5327
13101131000
rpoplin-dv42SNPtvlowcmp_SimpleRepeat_triTR_11to50homalt
99.9618
99.9237
100.0000
35.5315
13101131000
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.5174
99.9237
99.1144
60.1090
392833917352
5.7143
cchapple-customSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.3326
52714527000
jlack-gatkSNPtifunc_cdshomalt
99.9621
99.9242
100.0000
19.9058
52714527100
ckim-dragenSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8953
99.9243
99.8662
56.6428
171641317169237
30.4348
ckim-dragenSNP*HG002complexvarhomalt
99.9551
99.9245
99.9858
19.8995
2883562182885654141
100.0000