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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
76701-76750 / 86044 show all
dgrover-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9214
99.9010
99.9417
55.7201
171601717156108
80.0000
dgrover-gatkSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3002
99.9010
98.7065
40.6968
1816518181622384
1.6807
hfeng-pmm2SNPtvmap_sirenhomalt
99.9014
99.9014
99.9014
56.1199
172231717220179
52.9412
rpoplin-dv42SNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9507
99.9014
100.0000
54.7268
60826608200
cchapple-customSNP*func_cdshet
99.6697
99.9014
99.4391
30.1424
111501111168631
1.5873
dgrover-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9262
99.9016
99.9508
45.9204
40614406121
50.0000
bgallagher-sentieonSNPtilowcmp_SimpleRepeat_homopolymer_6to10het
99.9139
99.9016
99.9262
45.6684
40614406131
33.3333
hfeng-pmm3INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.9263
99.9017
99.9509
53.9245
10168101016855
100.0000
ckim-gatkINDELI1_5HG002complexvarhomalt
99.8588
99.9033
99.8143
52.9260
1343513134412524
96.0000
bgallagher-sentieonINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
98.9950
99.9034
98.1030
36.7067
724077240140139
99.2857
dgrover-gatkINDELD1_5lowcmp_SimpleRepeat_diTR_11to50homalt
99.3482
99.9034
98.7991
36.8548
7240772408887
98.8636
eyeh-varpipeSNPtiHG002complexvar*
99.8888
99.9038
99.8738
17.3355
507948489484239612191
31.2092
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50het
98.7888
99.9038
97.6985
41.2693
1142211114192692
0.7435
raldana-dualsentieonINDEL*HG002complexvarhomalt
99.7249
99.9038
99.5467
56.9673
270012627010123119
96.7480
rpoplin-dv42SNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.9282
99.9043
99.9521
44.5722
62626626233
100.0000
astatham-gatkSNPtvHG002complexvarhomalt
99.9458
99.9043
99.9874
22.8056
9502091950051210
83.3333
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.2716
99.9044
96.6913
55.0844
835888358286283
98.9510
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.8527
99.9044
97.8230
55.8586
835888358186184
98.9247
rpoplin-dv42SNP*lowcmp_SimpleRepeat_triTR_11to50*
99.9252
99.9048
99.9456
33.1240
73487734343
75.0000
bgallagher-sentieonINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.2325
99.9052
94.6990
55.6809
316233162177175
98.8701
astatham-gatkSNPtifunc_cdshomalt
99.9526
99.9052
100.0000
19.7136
52705527000
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
55.9029
316233162125124
99.2000
dgrover-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.0161
99.9052
96.1971
56.0561
316233162125124
99.2000
ltrigg-rtg2SNPtifunc_cdshomalt
99.9526
99.9052
100.0000
20.2844
52705527000
ckim-dragenSNPtiHG002compoundhethomalt
99.8648
99.9053
99.8243
30.4352
7387773881313
100.0000
hfeng-pmm1SNPtv**
99.9383
99.9053
99.9713
20.8629
96877291896869127843
15.4676
hfeng-pmm1SNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.9381
99.9059
99.9703
56.7400
20180192018066
100.0000
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8120
99.9059
99.7183
81.3713
10621106231
33.3333
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8120
99.9059
99.7183
81.2335
10621106231
33.3333
bgallagher-sentieonINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8590
99.9059
99.8120
81.1281
10621106221
50.0000
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.3928
99.9061
98.8848
68.4550
1064110641212
100.0000
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.3464
99.9061
98.7929
68.3700
1064110641313
100.0000
ckim-dragenSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
99.8125
99.9061
99.7191
40.4113
744577455212
9.5238
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.3928
99.9061
98.8848
68.5288
1064110641212
100.0000
dgrover-gatkSNPtvlowcmp_SimpleRepeat_quadTR_11to50*
98.8905
99.9061
97.8953
39.6283
7445774421603
1.8750
jlack-gatkINDELI1_5lowcmp_SimpleRepeat_quadTR_11to50homalt
99.1150
99.9061
98.3364
68.3163
1064110641818
100.0000
jlack-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50het
99.0481
99.9065
98.2044
43.3046
213622133392
5.1282
jli-customSNP*HG002complexvar*
99.9396
99.9065
99.9727
19.0201
75367670575356520691
44.1748
bgallagher-sentieonINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8363
99.9065
99.7662
76.2965
21362213451
20.0000
jli-customSNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.2134
99.9065
98.5299
39.2599
1816617181632714
1.4760
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.9064
99.9065
99.9064
76.8906
21362213421
50.0000
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8597
99.9065
99.8129
76.6441
21362213441
25.0000
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.8597
99.9065
99.8129
76.8740
21362213441
25.0000
hfeng-pmm2SNPtv**
99.9268
99.9066
99.9471
21.6564
96878490696870551342
8.1871
rpoplin-dv42SNPtisegduphomalt
99.8469
99.9067
99.7871
88.5156
7498774981616
100.0000
egarrison-hhgaSNPtisegduphomalt
99.8003
99.9067
99.6942
88.4424
7498774982323
100.0000
bgallagher-sentieonSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.9156
99.9069
99.9243
55.5895
171611617157138
61.5385
ghariani-varprowlSNP*segduphomalt
99.4257
99.9069
98.9491
89.5722
10733101073411465
57.0175
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1619
21502215022
100.0000
hfeng-pmm3INDEL*lowcmp_SimpleRepeat_triTR_11to50homalt
99.9071
99.9071
99.9071
44.1764
21502215022
100.0000