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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1524 1525 1526 1527 1528 1529 1530 1531 1532 ... 1720 1721 » 76351-76400 / 86044 show all
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.0793	1464	2	1464	0	0
hfeng-pmm2	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8228	99.8636	99.7820	48.9282	3661	5	3661	8	8	100.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	45.3935	1464	2	1464	0	0
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	43.1014	1464	2	1464	0	0
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7261	99.8636	99.5890	49.1643	1464	2	1454	6	3	50.0000
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.9318	99.8637	100.0000	42.6858	2198	3	2198	0	0
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8864	99.8637	99.9091	41.9065	2198	3	2198	2	2	100.0000
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8601	99.8647	99.8556	55.3095	11069	15	11065	16	7	43.7500
ltrigg-rtg2	SNP	ti	*	het	99.8504	99.8647	99.8361	15.7716	1280159	1735	1280167	2101	75	3.5697
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0282	99.8648	98.2055	45.9010	10343	14	10343	189	184	97.3545
jlack-gatk	SNP	ti	HG002compoundhet	homalt	99.8918	99.8648	99.9188	30.3225	7384	10	7384	6	6	100.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.4474	99.8648	99.0334	44.0841	10343	14	10348	101	98	97.0297
gduggal-bwafb	SNP	ti	*	het	99.7363	99.8649	99.6080	22.2231	1280165	1732	1280284	5038	382	7.5824
jlack-gatk	INDEL	D1_5	*	homalt	99.6645	99.8651	99.4647	59.9060	48860	66	48867	263	260	98.8593
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	97.1720	99.8658	94.6197	41.0468	7442	10	7439	423	4	0.9456
ckim-vqsr	INDEL	*	*	homalt	99.5675	99.8658	99.2711	58.9429	125004	168	125017	918	901	98.1481
gduggal-bwafb	SNP	ti	*	*	99.8083	99.8659	99.7507	20.3177	2082722	2796	2082858	5206	495	9.5083
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.8360	99.8663	95.8865	61.2690	20172	27	20210	867	535	61.7070
raldana-dualsentieon	SNP	ti	segdup	homalt	99.9134	99.8668	99.9600	87.2078	7495	10	7495	3	3	100.0000
cchapple-custom	SNP	ti	segdup	homalt	99.8600	99.8668	99.8533	87.0523	7495	10	7487	11	11	100.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9333	99.8668	100.0000	51.4674	2249	3	2249	0	0
ltrigg-rtg1	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9333	99.8668	100.0000	53.2144	2249	3	2307	0	0
jli-custom	SNP	ti	segdup	*	99.6094	99.8669	99.3533	88.6519	19511	26	19511	127	6	4.7244
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8805	99.8672	99.8937	56.0776	11281	15	11280	12	12	100.0000
qzeng-custom	SNP	ti	func_cds	homalt	99.8860	99.8673	99.9047	18.9998	5268	7	5243	5	3	60.0000
dgrover-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5314	99.8673	99.1977	62.4958	35372	47	35361	286	20	6.9930
gduggal-bwafb	SNP	ti	*	homalt	99.9234	99.8676	99.9793	17.0184	801976	1063	801993	166	111	66.8675
ltrigg-rtg2	SNP	*	HG002complexvar	homalt	99.9218	99.8676	99.9761	19.6026	288192	382	288118	69	68	98.5507
ltrigg-rtg2	SNP	*	func_cds	*	99.6865	99.8678	99.5059	22.3605	18126	24	18125	90	1	1.1111
jmaeng-gatk	SNP	*	func_cds	*	99.4513	99.8678	99.0382	31.9360	18126	24	18123	176	1	0.5682
ckim-gatk	SNP	*	func_cds	*	99.6618	99.8678	99.4567	31.5863	18126	24	18123	99	1	1.0101
jmaeng-gatk	INDEL	D1_5	HG002complexvar	homalt	99.8538	99.8679	99.8397	60.1891	10584	14	10591	17	15	88.2353
ckim-dragen	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7859	99.8680	99.7039	39.7224	18159	24	18186	54	6	11.1111
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1097	99.8684	98.3624	63.9223	8349	11	8349	139	138	99.2806
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1097	99.8684	98.3624	63.9223	8349	11	8349	139	138	99.2806
ckim-vqsr	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.8173	99.8685	97.7879	55.5694	8355	11	8355	189	186	98.4127
ghariani-varprowl	SNP	*	*	*	99.3496	99.8685	98.8361	25.2137	3050577	4016	3051086	35930	2639	7.3448
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	98.7589	99.8685	97.6736	55.3106	8355	11	8355	199	195	97.9899
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.9125	99.8688	97.9744	43.3648	11418	15	11415	236	2	0.8475
jmaeng-gatk	INDEL	*	*	homalt	99.5485	99.8690	99.2301	59.0290	125008	164	125021	970	941	97.0103
raldana-dualsentieon	SNP	*	*	het	99.8865	99.8694	99.9036	19.2179	1871141	2446	1871016	1806	43	2.3810
rpoplin-dv42	SNP	*	HG002complexvar	*	99.9179	99.8694	99.9664	18.9545	753396	985	753221	253	214	84.5850
bgallagher-sentieon	SNP	*	segdup	homalt	99.8883	99.8697	99.9069	88.1168	10729	14	10729	10	10	100.0000
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	98.5435	99.8700	97.2518	40.3648	4610	6	4388	124	9	7.2581
bgallagher-sentieon	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4306	99.8701	98.9950	61.8984	35373	46	35362	359	20	5.5710
astatham-gatk	SNP	*	HG002compoundhet	homalt	99.8748	99.8702	99.8794	34.8528	10768	14	10763	13	12	92.3077
cchapple-custom	SNP	tv	*	het	99.6701	99.8702	99.4708	26.9512	590928	768	591553	3147	233	7.4039
hfeng-pmm2	SNP	*	map_l100_m1_e0	homalt	99.8648	99.8704	99.8593	60.9853	26968	35	26968	38	19	50.0000
ckim-vqsr	INDEL	*	HG002complexvar	homalt	99.7470	99.8705	99.6237	57.3434	26992	35	27005	102	98	96.0784
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8061	99.8706	99.7416	78.4940	772	1	772	2	0	0.0000

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