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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1523 1524 1525 1526 1527 1528 1529 1530 1531 ... 1720 1721 » 76301-76350 / 86044 show all
astatham-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4789	99.8586	99.1021	72.7252	3532	5	3532	32	32	100.0000
jli-custom	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5913	99.8586	99.3255	71.8824	3532	5	3534	24	24	100.0000
bgallagher-sentieon	SNP	ti	segdup	het	99.2686	99.8587	98.6854	90.5804	12013	17	12011	160	2	1.2500
qzeng-custom	SNP	ti	func_cds	het	99.7296	99.8589	99.6007	30.7386	8492	12	8481	34	1	2.9412
hfeng-pmm2	SNP	tv	map_l100_m2_e0	homalt	99.8535	99.8589	99.8481	64.9206	9201	13	9201	14	5	35.7143
dgrover-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5765	99.8591	99.2956	64.7620	27639	39	27629	196	19	9.6939
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8358	99.8591	99.8124	64.8592	27639	39	27673	52	16	30.7692
bgallagher-sentieon	INDEL	I1_5	*	homalt	99.6433	99.8593	99.4283	55.0054	60343	85	60348	347	343	98.8473
hfeng-pmm3	INDEL	*	HG002complexvar	homalt	99.7967	99.8594	99.7340	55.8371	26989	38	26999	72	66	91.6667
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8362	99.8597	99.8128	76.4258	2135	3	2133	4	1	25.0000
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.6745	99.8597	99.4900	40.5130	2135	3	2146	11	4	36.3636
ckim-dragen	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7661	99.8597	99.6727	76.2860	2135	3	2132	7	1	14.2857
eyeh-varpipe	SNP	*	map_l100_m2_e1	homalt	99.8719	99.8597	99.8841	65.3160	27757	39	26718	31	16	51.6129
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	98.2187	99.8597	96.6309	38.9931	2135	3	1979	69	6	8.6957
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.2813	99.8597	98.7097	43.7241	2135	3	2142	28	3	10.7143
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8949	99.8598	99.9299	27.9657	1425	2	1426	1	0	0.0000
ckim-dragen	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7569	99.8600	99.6542	57.5039	17826	25	17865	62	15	24.1935
dgrover-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6673	99.8600	99.4754	57.8446	17826	25	17825	94	5	5.3192
hfeng-pmm2	SNP	tv	map_l100_m2_e1	homalt	99.8549	99.8602	99.8495	64.9261	9289	13	9289	14	5	35.7143
jli-custom	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.7232	99.8605	99.5863	54.2148	27920	39	27921	116	9	7.7586
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7677	99.8606	99.6750	47.8198	2149	3	2147	7	7	100.0000
raldana-dualsentieon	SNP	*	HG002compoundhet	homalt	99.8887	99.8609	99.9165	34.8192	10767	15	10768	9	8	88.8889
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.8269	99.8611	99.7927	69.0150	1438	2	1444	3	2	66.6667
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3038	99.8611	98.7526	69.4861	1438	2	1425	18	1	5.5556
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	96.2658	99.8611	92.9204	71.7174	1438	2	1365	104	1	0.9615
rpoplin-dv42	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8811	99.8613	99.9009	61.7921	10083	14	10083	10	2	20.0000
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9158	99.8613	99.9703	61.4918	10083	14	10085	3	3	100.0000
hfeng-pmm3	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9108	99.8613	99.9603	61.0721	10083	14	10083	4	4	100.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.9134	99.8615	99.9653	69.5900	11536	16	11536	4	3	75.0000
hfeng-pmm1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.9134	99.8615	99.9653	69.5900	11536	16	11536	4	3	75.0000
rpoplin-dv42	SNP	tv	HG002complexvar	*	99.9096	99.8615	99.9577	21.9240	245811	341	245702	104	87	83.6538
gduggal-bwafb	SNP	*	*	het	99.6957	99.8616	99.5303	23.9839	1871007	2594	1871215	8830	595	6.7384
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7746	99.8617	99.6878	62.5042	35370	49	35441	111	28	25.2252
ltrigg-rtg1	SNP	ti	*	het	99.8539	99.8618	99.8460	16.3632	1280123	1771	1280140	1975	52	2.6329
gduggal-bwafb	SNP	*	*	*	99.7820	99.8619	99.7021	21.9848	3050417	4217	3050656	9115	775	8.5025
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7015	99.8620	99.5415	64.0336	2171	3	2171	10	0	0.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7244	99.8620	99.5872	63.6182	2171	3	2171	9	0	0.0000
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.8161	99.8620	99.7702	64.9597	2171	3	2171	5	0	0.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7702	99.8620	99.6786	64.4814	2171	3	2171	7	0	0.0000
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2911	99.8620	98.7267	65.1671	2171	3	2171	28	1	3.5714
qzeng-custom	SNP	ti	func_cds	*	99.7894	99.8622	99.7168	26.7032	13768	19	13732	39	4	10.2564
ltrigg-rtg2	SNP	ti	func_cds	*	99.7392	99.8622	99.6165	20.8703	13768	19	13767	53	1	1.8868
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8854	99.8625	99.9082	58.4392	10896	15	10886	10	6	60.0000
gduggal-bwafb	SNP	*	*	homalt	99.9194	99.8626	99.9762	18.5273	1178541	1621	1178572	280	175	62.5000
ckim-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.6391	99.8632	97.4447	51.1732	5110	7	5110	134	133	99.2537
dgrover-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.7153	99.8632	97.5936	51.6484	5110	7	5110	126	125	99.2063
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.0712	99.8632	96.3424	50.4716	5110	7	5110	194	193	99.4845
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.2725	99.8634	98.6886	65.8031	17544	24	17534	233	15	6.4378
ckim-dragen	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.7926	99.8634	99.7220	66.5121	17544	24	17576	49	13	26.5306
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.9317	99.8636	100.0000	40.1819	1464	2	1447	0	0

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