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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1522 1523 1524 1525 1526 1527 1528 1529 1530 ... 1720 1721 » 76251-76300 / 86044 show all
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8903	99.8539	99.9268	27.7249	2734	4	2730	2	2	100.0000
hfeng-pmm3	SNP	ti	map_l100_m2_e1	homalt	99.8675	99.8540	99.8810	62.4833	18467	27	18467	22	12	54.5455
gduggal-bwafb	SNP	tv	*	het	99.6077	99.8543	99.3624	27.5297	590842	862	590931	3792	213	5.6171
astatham-gatk	INDEL	I1_5	*	homalt	99.7125	99.8544	99.5710	55.1217	60340	88	60345	260	257	98.8462
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7416	99.8545	99.6289	56.0363	6175	9	6175	23	2	8.6957
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7174	99.8545	99.5807	55.4302	6175	9	6175	26	1	3.8462
ltrigg-rtg2	SNP	tv	HG002complexvar	homalt	99.9174	99.8549	99.9800	22.4289	94973	138	95001	19	19	100.0000
ghariani-varprowl	SNP	ti	func_cds	*	99.6201	99.8549	99.3864	28.0976	13767	20	13767	85	9	10.5882
hfeng-pmm1	INDEL	D1_5	*	homalt	99.8651	99.8549	99.8753	58.6796	48855	71	48859	61	60	98.3607
ghariani-varprowl	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.0963	99.8550	96.3986	45.7203	2754	4	2757	103	70	67.9612
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8912	99.8550	99.9274	36.4538	2754	4	2754	2	2	100.0000
gduggal-bwafb	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.5239	99.8551	99.1949	41.9366	3445	5	3450	28	3	10.7143
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.3650	99.8551	98.8796	40.1582	3445	5	3442	39	2	5.1282
ckim-vqsr	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.0234	99.8552	98.2053	45.9033	10342	15	10342	189	184	97.3545
hfeng-pmm1	SNP	tv	*	het	99.9077	99.8553	99.9601	20.8554	590840	856	590766	236	19	8.0509
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9276	99.8554	100.0000	56.9648	1381	2	1381	0	0
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.9276	99.8554	100.0000	53.0584	1381	2	1366	0	0
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.4994	99.8555	99.1459	64.4153	27638	40	27628	238	20	8.4034
eyeh-varpipe	SNP	*	map_l100_m1_e0	homalt	99.8701	99.8556	99.8846	63.0607	26964	39	25962	30	16	53.3333
ckim-gatk	INDEL	I6_15	*	homalt	97.7332	99.8557	95.6989	54.8919	6230	9	6230	280	278	99.2857
ckim-vqsr	INDEL	I6_15	*	homalt	97.7408	99.8557	95.7136	54.8957	6230	9	6230	279	277	99.2832
dgrover-gatk	INDEL	I6_15	*	homalt	97.7715	99.8557	95.7725	55.4177	6230	9	6230	275	272	98.9091
astatham-gatk	INDEL	I6_15	*	homalt	97.7332	99.8557	95.6989	54.9107	6230	9	6230	280	278	99.2857
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6761	99.8558	99.4971	65.7565	1385	2	1385	7	0	0.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8217	99.8558	99.7875	65.2986	1385	2	1409	3	2	66.6667
jlack-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.9286	99.8558	98.0184	66.5562	1385	2	1385	28	1	3.5714
jmaeng-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7479	99.8558	99.6403	66.1800	1385	2	1385	5	0	0.0000
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8558	99.8558	99.8558	64.1880	1385	2	1385	2	1	50.0000
rpoplin-dv42	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.8560	99.8560	99.8559	61.0125	35368	51	35352	51	31	60.7843
hfeng-pmm2	SNP	tv	*	het	99.8886	99.8560	99.9212	22.0414	590844	852	590770	466	18	3.8627
jli-custom	SNP	tv	HG002complexvar	het	99.9074	99.8560	99.9588	21.3761	150514	217	150454	62	22	35.4839
hfeng-pmm2	SNP	tv	map_l100_m1_e0	homalt	99.8507	99.8562	99.8452	62.5538	9030	13	9030	14	5	35.7143
jlack-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8935	99.8564	99.9306	55.5702	20170	29	20170	14	13	92.8571
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.9393	99.8565	98.0388	61.8965	8348	12	8348	167	166	99.4012
raldana-dualsentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.9393	99.8565	98.0388	61.8965	8348	12	8348	167	166	99.4012
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.6936	99.8565	97.5576	63.3125	8348	12	8348	209	208	99.5215
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.6936	99.8565	97.5576	63.3125	8348	12	8348	209	208	99.5215
bgallagher-sentieon	SNP	ti	segdup	*	99.5103	99.8567	99.1663	89.5899	19509	28	19507	164	6	3.6585
ciseli-custom	SNP	*	func_cds	homalt	99.2844	99.8567	98.7187	22.2148	6969	10	6934	90	38	42.2222
ltrigg-rtg1	SNP	*	*	het	99.8185	99.8570	99.7799	17.5567	1870919	2679	1871167	4127	102	2.4715
ltrigg-rtg2	SNP	*	*	het	99.8157	99.8572	99.7742	16.9842	1870922	2676	1871158	4235	135	3.1877
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.7654	99.8573	95.7592	54.7998	2800	4	2800	124	123	99.1935
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.7824	99.8573	95.7920	54.8083	2800	4	2800	123	122	99.1870
jlack-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8006	99.8575	99.7437	62.4217	7009	10	7005	18	3	16.6667
dgrover-gatk	INDEL	I1_5	*	homalt	99.7224	99.8577	99.5874	55.4630	60342	86	60347	250	246	98.4000
ghariani-varprowl	SNP	*	*	het	99.0974	99.8581	98.3482	28.2380	1870907	2659	1871294	31430	431	1.3713
eyeh-varpipe	SNP	*	map_l100_m2_e0	homalt	99.8725	99.8583	99.8868	65.3085	27484	39	26466	30	16	53.3333
jlack-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8937	99.8584	99.9291	56.1359	11280	16	11280	8	7	87.5000
ckim-vqsr	INDEL	D1_5	HG002complexvar	homalt	99.8538	99.8585	99.8491	60.1802	10583	15	10590	16	14	87.5000
ckim-vqsr	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5070	99.8586	99.1578	72.7530	3532	5	3532	30	30	100.0000

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