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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1521 1522 1523 1524 1525 1526 1527 1528 1529 ... 1720 1721 » 76201-76250 / 86044 show all
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	98.7189	99.8474	97.6155	43.1356	1309	2	1310	32	0	0.0000
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6319	99.8474	99.4174	58.2620	3925	6	3925	23	2	8.6957
ckim-dragen	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.8231	99.8474	99.7988	56.7435	3925	6	3969	8	2	25.0000
ckim-dragen	SNP	tv	segdup	*	98.3491	99.8476	96.8949	93.2025	8519	13	8519	273	6	2.1978
eyeh-varpipe	SNP	tv	segdup	*	97.0429	99.8476	94.3914	91.6933	8519	13	8398	499	11	2.2044
cchapple-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.7021	99.8478	99.5569	77.2437	656	1	674	3	3	100.0000
jmaeng-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.9238	99.8478	100.0000	80.6261	656	1	656	0	0
egarrison-hhga	SNP	ti	HG002complexvar	homalt	99.8937	99.8480	99.9395	18.4037	193169	294	193188	117	94	80.3419
hfeng-pmm1	SNP	tv	map_l100_m2_e0	homalt	99.8535	99.8481	99.8589	64.8359	9200	14	9200	13	5	38.4615
hfeng-pmm2	INDEL	*	HG002complexvar	homalt	99.7542	99.8483	99.6603	56.1296	26986	41	26994	92	86	93.4783
ciseli-custom	SNP	ti	func_cds	homalt	99.3195	99.8483	98.7963	20.7719	5267	8	5253	64	29	45.3125
cchapple-custom	SNP	tv	func_cds	het	99.2733	99.8495	98.7037	37.1216	2653	4	2665	35	0	0.0000
hfeng-pmm1	SNP	tv	map_l100_m2_e1	homalt	99.8549	99.8495	99.8602	64.8422	9288	14	9288	13	5	38.4615
ltrigg-rtg1	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9248	99.8496	100.0000	34.3750	1328	2	1323	0	0
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9248	99.8496	100.0000	40.4484	1328	2	1328	0	0
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9248	99.8496	100.0000	41.6849	1328	2	1329	0	0
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.9248	99.8496	100.0000	41.9185	1328	2	1326	0	0
hfeng-pmm3	SNP	ti	map_l100_m1_e0	homalt	99.8636	99.8497	99.8775	60.0521	17933	27	17933	22	12	54.5455
egarrison-hhga	SNP	ti	*	*	99.9062	99.8498	99.9627	17.0848	2082379	3132	2082402	778	200	25.7069
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	94.2388	99.8503	89.2244	68.0061	1334	2	1300	157	4	2.5478
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7261	99.8504	99.6021	49.5356	4005	6	4005	16	2	12.5000
jli-custom	SNP	ti	segdup	het	99.4165	99.8504	98.9864	89.3080	12012	18	12012	123	2	1.6260
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7261	99.8504	99.6021	48.7836	4005	6	4005	16	1	6.2500
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	97.9793	99.8507	96.1768	39.7598	4682	7	4679	186	1	0.5376
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	het	97.9485	99.8507	96.1175	40.3651	4682	7	4679	189	1	0.5291
bgallagher-sentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8950	99.8510	99.9390	54.8240	14748	22	14750	9	4	44.4444
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	94.0198	99.8511	88.8320	71.0242	2682	4	2601	327	6	1.8349
ghariani-varprowl	SNP	*	func_cds	*	99.5441	99.8512	99.2389	30.8362	18123	27	18123	139	14	10.0719
bgallagher-sentieon	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	98.6516	99.8513	97.4804	41.9937	11416	17	11413	295	2	0.6780
bgallagher-sentieon	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9009	99.8514	99.9504	61.6260	10082	15	10082	5	5	100.0000
hfeng-pmm1	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.9059	99.8514	99.9603	61.6429	10082	15	10082	4	4	100.0000
jlack-gatk	SNP	*	HG002compoundhet	homalt	99.8516	99.8516	99.8515	34.5857	10766	16	10761	16	15	93.7500
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.1461	99.8517	98.4503	43.0996	6734	10	6734	106	1	0.9434
astatham-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.9258	99.8517	100.0000	35.0718	6735	10	6735	0	0
rpoplin-dv42	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.8665	99.8517	99.8813	39.6598	6734	10	6732	8	2	25.0000
jpowers-varprowl	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.3156	99.8517	96.8261	47.4887	6735	10	6742	221	131	59.2760
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	het	99.3508	99.8517	98.8550	44.7482	6734	10	6734	78	1	1.2821
gduggal-bwafb	SNP	tv	*	homalt	99.9109	99.8520	99.9697	21.5631	376565	558	376579	114	64	56.1404
astatham-gatk	SNP	tv	HG002compoundhet	homalt	99.8376	99.8524	99.8227	42.7314	3383	5	3378	6	5	83.3333
ghariani-varprowl	SNP	tv	HG002compoundhet	homalt	83.7163	99.8524	72.0698	50.4793	3383	5	3388	1313	1124	85.6055
jpowers-varprowl	SNP	tv	HG002compoundhet	homalt	83.3558	99.8524	71.5372	51.1753	3383	5	3388	1348	1126	83.5312
jli-custom	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.6800	99.8524	97.5347	38.6336	7441	11	7438	188	3	1.5957
hfeng-pmm3	SNP	ti	map_l100_m2_e0	homalt	99.8662	99.8525	99.8798	62.5049	18282	27	18282	22	12	54.5455
ckim-dragen	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.8169	99.8526	99.7812	60.4097	55549	82	55631	122	39	31.9672
jli-custom	INDEL	I1_5	*	homalt	99.8065	99.8527	99.7603	53.8126	60339	89	60343	145	140	96.5517
bgallagher-sentieon	SNP	ti	segdup	homalt	99.9000	99.8534	99.9467	87.4231	7494	11	7494	4	4	100.0000
gduggal-bwafb	SNP	tv	*	*	99.7254	99.8534	99.5978	25.3671	968276	1422	968379	3911	282	7.2104
dgrover-gatk	SNP	ti	segdup	homalt	99.9067	99.8534	99.9600	87.5169	7494	11	7494	3	3	100.0000
jli-custom	INDEL	*	*	homalt	99.7041	99.8538	99.5548	57.2311	124989	183	124999	559	535	95.7066
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8903	99.8539	99.9268	27.2049	2734	4	2730	2	2	100.0000

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