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Explore HG002 comparison results
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| Entry | Type | Subtype | Subset | Genotype | F-score | Recall | Precision | Frac_NA | Truth TP | Truth FN | Query TP | Query FP | FP gt | % FP ma | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
75901-75950 / 86044 show all | |||||||||||||||
| ndellapenna-hhga | INDEL | D1_5 | lowcmp_SimpleRepeat_homopolymer_6to10 | homalt | 99.7349 | 99.8133 | 99.6566 | 54.0176 | 10159 | 19 | 10157 | 35 | 30 | 85.7143 | |
| raldana-dualsentieon | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8135 | 100.0000 | 43.3110 | 1606 | 3 | 1606 | 0 | 0 | ||
| mlin-fermikit | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 98.4672 | 99.8135 | 97.1567 | 54.5004 | 1606 | 3 | 1606 | 47 | 36 | 76.5957 | |
| cchapple-custom | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8135 | 100.0000 | 43.8707 | 1606 | 3 | 1598 | 0 | 0 | ||
| jmaeng-gatk | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.9067 | 99.8135 | 100.0000 | 43.7478 | 1606 | 3 | 1606 | 0 | 0 | ||
| hfeng-pmm2 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8756 | 99.8135 | 99.9378 | 53.0803 | 1606 | 3 | 1606 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | SNP | * | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged | homalt | 99.8756 | 99.8135 | 99.9378 | 52.0442 | 1606 | 3 | 1606 | 1 | 0 | 0.0000 | |
| jlack-gatk | SNP | ti | segdup | homalt | 99.8800 | 99.8135 | 99.9466 | 87.6556 | 7491 | 14 | 7491 | 4 | 4 | 100.0000 | |
| jlack-gatk | SNP | ti | lowcmp_SimpleRepeat_quadTR_11to50 | * | 99.0614 | 99.8136 | 98.3203 | 43.6922 | 10712 | 20 | 10712 | 183 | 5 | 2.7322 | |
| mlin-fermikit | SNP | * | func_cds | homalt | 99.5356 | 99.8137 | 99.2590 | 20.0683 | 6966 | 13 | 6966 | 52 | 48 | 92.3077 | |
| bgallagher-sentieon | SNP | ti | lowcmp_SimpleRepeat_diTR_11to50 | * | 99.8449 | 99.8139 | 99.8759 | 69.1925 | 4828 | 9 | 4828 | 6 | 5 | 83.3333 | |
| jlack-gatk | INDEL | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.7214 | 99.8141 | 99.6289 | 46.6996 | 2148 | 4 | 2148 | 8 | 7 | 87.5000 | |
| ckim-dragen | INDEL | I1_5 | HG002complexvar | homalt | 99.7432 | 99.8141 | 99.6725 | 52.7072 | 13423 | 25 | 13390 | 44 | 44 | 100.0000 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331 | homalt | 98.0566 | 99.8141 | 96.3599 | 59.7337 | 3759 | 7 | 3759 | 142 | 138 | 97.1831 | |
| jmaeng-gatk | INDEL | D6_15 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged | homalt | 98.0566 | 99.8141 | 96.3599 | 59.7337 | 3759 | 7 | 3759 | 142 | 138 | 97.1831 | |
| cchapple-custom | INDEL | I1_5 | * | homalt | 99.7155 | 99.8147 | 99.6166 | 51.9774 | 60316 | 112 | 59755 | 230 | 228 | 99.1304 | |
| hfeng-pmm2 | SNP | * | segdup | * | 99.6762 | 99.8147 | 99.5380 | 90.2632 | 28015 | 52 | 28009 | 130 | 13 | 10.0000 | |
| gduggal-bwafb | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.3548 | 99.8148 | 98.8991 | 82.9794 | 539 | 1 | 539 | 6 | 4 | 66.6667 | |
| ckim-vqsr | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.5383 | 99.8148 | 99.2634 | 82.5064 | 539 | 1 | 539 | 4 | 3 | 75.0000 | |
| dgrover-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4465 | 99.8148 | 99.0809 | 82.3434 | 539 | 1 | 539 | 5 | 4 | 80.0000 | |
| ckim-gatk | INDEL | I1_5 | map_l100_m2_e1 | homalt | 99.4465 | 99.8148 | 99.0809 | 82.4799 | 539 | 1 | 539 | 5 | 4 | 80.0000 | |
| dgrover-gatk | SNP | * | segdup | het | 99.5334 | 99.8152 | 99.2533 | 91.5277 | 17285 | 32 | 17279 | 130 | 3 | 2.3077 | |
| hfeng-pmm2 | SNP | ti | segdup | * | 99.6754 | 99.8157 | 99.5355 | 89.6871 | 19501 | 36 | 19499 | 91 | 9 | 9.8901 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e0 | homalt | 99.8130 | 99.8158 | 99.8101 | 69.0538 | 17343 | 32 | 17343 | 33 | 14 | 42.4242 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e0 | homalt | 99.8542 | 99.8158 | 99.8925 | 71.0277 | 17343 | 32 | 16728 | 18 | 10 | 55.5556 | |
| ckim-dragen | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8397 | 99.8160 | 99.8635 | 64.2706 | 2170 | 4 | 2194 | 3 | 2 | 66.6667 | |
| rpoplin-dv42 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 99.8619 | 99.8160 | 99.9079 | 64.2822 | 2170 | 4 | 2170 | 2 | 1 | 50.0000 | |
| qzeng-custom | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9647 | 99.8160 | 98.1279 | 69.9341 | 2170 | 4 | 2149 | 41 | 1 | 2.4390 | |
| ltrigg-rtg1 | SNP | tv | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | * | 98.9606 | 99.8160 | 98.1198 | 64.2712 | 2170 | 4 | 2244 | 43 | 1 | 2.3256 | |
| hfeng-pmm2 | SNP | ti | map_l150_m2_e0 | homalt | 99.8031 | 99.8162 | 99.7900 | 73.1902 | 7602 | 14 | 7602 | 16 | 7 | 43.7500 | |
| ckim-gatk | INDEL | D1_5 | * | het | 99.6268 | 99.8162 | 99.4381 | 60.7761 | 87413 | 161 | 87419 | 494 | 126 | 25.5061 | |
| jmaeng-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 78.0409 | 545 | 1 | 545 | 2 | 2 | 100.0000 | |
| hfeng-pmm2 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9083 | 99.8168 | 100.0000 | 76.4680 | 545 | 1 | 545 | 0 | 0 | ||
| jlack-gatk | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 77.0842 | 545 | 1 | 545 | 2 | 1 | 50.0000 | |
| hfeng-pmm3 | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.9083 | 99.8168 | 100.0000 | 76.0545 | 545 | 1 | 545 | 0 | 0 | ||
| raldana-dualsentieon | INDEL | D1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged | homalt | 99.7255 | 99.8168 | 99.6344 | 77.4526 | 545 | 1 | 545 | 2 | 2 | 100.0000 | |
| hfeng-pmm3 | SNP | ti | HG002complexvar | * | 99.9019 | 99.8171 | 99.9868 | 17.4486 | 507506 | 930 | 507446 | 67 | 25 | 37.3134 | |
| gduggal-snapfb | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.0045 | 99.8174 | 98.2047 | 40.5930 | 2733 | 5 | 2735 | 50 | 3 | 6.0000 | |
| ndellapenna-hhga | SNP | * | lowcmp_SimpleRepeat_triTR_11to50 | homalt | 99.8356 | 99.8174 | 99.8539 | 32.2109 | 2733 | 5 | 2734 | 4 | 3 | 75.0000 | |
| hfeng-pmm2 | SNP | * | map_l125_m2_e1 | homalt | 99.8146 | 99.8175 | 99.8118 | 69.0869 | 17500 | 32 | 17500 | 33 | 14 | 42.4242 | |
| eyeh-varpipe | SNP | * | map_l125_m2_e1 | homalt | 99.8554 | 99.8175 | 99.8934 | 71.0933 | 17500 | 32 | 16871 | 18 | 10 | 55.5556 | |
| ckim-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 81.1664 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| ckim-dragen | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8177 | 99.8179 | 99.8175 | 80.5121 | 548 | 1 | 547 | 1 | 0 | 0.0000 | |
| cchapple-custom | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.6636 | 99.8179 | 99.5098 | 78.3746 | 548 | 1 | 609 | 3 | 2 | 66.6667 | |
| bgallagher-sentieon | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 80.8444 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| astatham-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 80.9639 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| dgrover-gatk | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 81.2244 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| ckim-vqsr | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 81.1664 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| hfeng-pmm3 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 80.4069 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |
| hfeng-pmm1 | INDEL | I1_5 | lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged | het | 99.8179 | 99.8179 | 99.8179 | 80.3578 | 548 | 1 | 548 | 1 | 0 | 0.0000 | |