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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
75751-75800 / 86044 show all
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8976
99.7954
100.0000
44.6809
14633148200
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8976
99.7954
100.0000
42.9630
14633146300
ckim-dragenSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhomalt
99.8976
99.7954
100.0000
42.8240
14633147800
gduggal-bwafbSNPtvHG002complexvarhomalt
99.8685
99.7960
99.9410
22.9952
94917194949315649
87.5000
gduggal-snapfbSNPtv*het
98.4503
99.7960
97.1404
29.1063
590497120759083917393571
3.2829
eyeh-varpipeSNP*lowcmp_SimpleRepeat_triTR_11to50*
98.9738
99.7961
98.1650
37.3497
734015700813112
9.1603
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
98.8848
99.7965
97.9897
57.5988
392383997821
1.2195
jmaeng-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7204
99.7965
99.6444
58.5971
392383923141
7.1429
eyeh-varpipeSNPtimap_siren*
99.4355
99.7967
99.0768
57.9702
1001512049787491255
6.0307
jlack-gatkINDEL*lowcmp_SimpleRepeat_quadTR_51to200homalt
96.6535
99.7967
93.7023
60.6607
49114913331
93.9394
hfeng-pmm3INDEL**homalt
99.7023
99.7971
99.6077
55.0410
124918254124928492475
96.5447
eyeh-varpipeSNP*map_l150_m2_e1homalt
99.8415
99.7971
99.8860
75.5645
118032411393138
61.5385
ckim-gatkSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.7825
99.7971
99.7680
39.6992
34437344082
25.0000
ltrigg-rtg2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.8985
99.7972
100.0000
50.7028
492149100
bgallagher-sentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5951
99.7972
99.3939
56.8439
492149230
0.0000
hfeng-pmm3SNPtimap_l125_m2_e0homalt
99.8195
99.7975
99.8415
68.5286
113352311335188
44.4444
dgrover-gatkINDELD1_5*het
99.7614
99.7979
99.7250
59.4296
8739717787406241125
51.8672
ltrigg-rtg2SNPtiHG002complexvar*
99.8779
99.7988
99.9570
17.4272
507413102350731621898
44.9541
raldana-dualsentieonSNPtiHG002complexvar*
99.8917
99.7990
99.9846
17.3582
50741410225073547829
37.1795
cchapple-customINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5991
99.7991
99.4000
72.8360
218554421701131126
96.1832
gduggal-snapfbSNP**homalt
99.6988
99.7992
99.5986
21.4529
1177792237011778604747451
9.5007
hfeng-pmm3SNPtimap_l125_m2_e1homalt
99.8210
99.7993
99.8428
68.5547
114352311435188
44.4444
gduggal-bwafbSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
98.4567
99.7995
97.1496
66.8736
2489524887310
13.6986
eyeh-varpipeSNPtimap_l125_m0_e0homalt
99.8314
99.7996
99.8632
71.9880
44829437963
50.0000
jpowers-varprowlSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.4879
99.7997
89.7129
85.3011
149531500172100
58.1395
hfeng-pmm1SNPtiHG002complexvar*
99.8935
99.8000
99.9872
17.3497
50741910175073606531
47.6923
hfeng-pmm2SNPtiHG002complexvar*
99.8914
99.8002
99.9829
17.3851
50742010165073618738
43.6782
hfeng-pmm1SNPtisegdup*
99.7442
99.8004
99.6881
88.7407
194983919496615
8.1967
ckim-gatkSNPtvlowcmp_SimpleRepeat_homopolymer_6to10het
99.8503
99.8005
99.9001
62.4759
700514700173
42.8571
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7260
99.8005
99.6515
49.5605
400384003142
14.2857
hfeng-pmm1SNPtvmap_l125_m2_e0homalt
99.7923
99.8006
99.7840
69.7785
6005126005135
38.4615
hfeng-pmm2SNPtvmap_l125_m2_e0homalt
99.7840
99.8006
99.7674
69.8673
6005126005145
35.7143
jlack-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.4079
99.8008
97.0534
66.9969
17533351752353219
3.5714
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.3819
99.8008
98.9665
67.1777
17533351752318315
8.1967
cchapple-customSNPtvsegdup*
99.5434
99.8008
99.2874
93.0362
8515178499619
14.7541
hfeng-pmm3SNPtvmap_l100_m1_e0homalt
99.8285
99.8010
99.8562
62.3809
9025189025135
38.4615
jlack-gatkINDELI1_5*homalt
99.5330
99.8014
99.2660
55.8866
6030812060314446434
97.3094
hfeng-pmm3INDELI1_5*homalt
99.7866
99.8014
99.7717
52.1729
6030812060313138134
97.1014
jlack-gatkSNP*lowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.1906
99.8023
98.5863
61.2684
555211105551079646
5.7789
hfeng-pmm2SNPtvmap_l125_m2_e1homalt
99.7860
99.8024
99.7696
69.9104
6062126062145
35.7143
hfeng-pmm1SNPtvmap_l125_m2_e1homalt
99.7942
99.8024
99.7860
69.8227
6062126062135
38.4615
ckim-dragenINDEL*lowcmp_SimpleRepeat_quadTR_11to50homalt
99.5645
99.8024
99.3278
58.3031
60601260584141
100.0000
bgallagher-sentieonSNP*HG002compoundhet*
99.8063
99.8025
99.8102
41.0420
2577151257644925
51.0204
gduggal-snapfbSNP***
99.2501
99.8026
98.7037
23.6262
304860460303049548400492047
5.1112
ckim-dragenINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8383
99.8028
99.8737
55.5058
2530950253073217
53.1250
eyeh-varpipeSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7839
99.8029
99.7650
51.9403
6076125943147
50.0000
ckim-vqsrSNP*func_cdshet
99.7448
99.8029
99.6867
36.7154
111392211136350
0.0000
jli-customSNP*segduphet
99.4076
99.8037
99.0146
89.8653
1728334172831722
1.1628
jli-customINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.8713
99.8037
99.9390
54.3200
14741291474294
44.4444
astatham-gatkINDELD1_5lowcmp_SimpleRepeat_triTR_11to50*
99.8650
99.8038
99.9264
43.6688
40698407231
33.3333