PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1505 1506 1507 1508 1509 1510 1511 1512 1513 ... 1720 1721 » 75401-75450 / 86044 show all
dgrover-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8814	99.7630	100.0000	64.2235	1684	4	1684	0	0
mlin-fermikit	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	94.2645	99.7630	89.3404	69.5631	1684	4	1693	202	155	76.7327
bgallagher-sentieon	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8222	99.7630	99.8814	64.1429	1684	4	1684	2	2	100.0000
raldana-dualsentieon	SNP	tv	map_l100_m2_e1	homalt	99.8494	99.7635	99.9354	60.9109	9280	22	9280	6	3	50.0000
eyeh-varpipe	SNP	*	map_siren	het	98.0835	99.7637	96.4589	61.2396	90776	215	87713	3220	51	1.5839
hfeng-pmm1	SNP	ti	map_l150_m2_e0	homalt	99.7833	99.7637	99.8030	73.2106	7598	18	7598	15	6	40.0000
hfeng-pmm2	SNP	tv	HG002compoundhet	homalt	99.7933	99.7639	99.8228	43.5008	3380	8	3380	6	5	83.3333
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7054	99.7642	99.6466	52.8246	2538	6	2538	9	1	11.1111
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5489	99.7642	99.3346	49.7344	2538	6	2538	17	0	0.0000
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	96.1521	99.7642	92.7925	63.8373	2538	6	2459	191	10	5.2356
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	98.1269	99.7642	96.5426	62.1131	2538	6	2541	91	11	12.0879
bgallagher-sentieon	SNP	*	map_siren	homalt	99.8557	99.7643	99.9473	50.0857	55026	130	55017	29	25	86.2069
jli-custom	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8234	99.7647	99.8822	49.2225	848	2	848	1	1	100.0000
hfeng-pmm2	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7647	99.7647	99.7647	48.5783	848	2	848	2	2	100.0000
raldana-dualsentieon	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	49.7048	848	2	848	4	4	100.0000
ckim-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5862	99.7647	99.4083	59.0715	17809	42	17808	106	7	6.6038
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5305	99.7647	99.2974	52.1032	848	2	848	6	6	100.0000
dgrover-gatk	SNP	tv	HG002compoundhet	*	99.7478	99.7647	99.7310	49.0520	8902	21	8897	24	15	62.5000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6475	99.7647	99.5305	50.8083	848	2	848	4	4	100.0000
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3940	99.7649	97.0603	61.7981	11457	27	11457	347	341	98.2709
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.3687	99.7649	97.0110	61.9339	11457	27	11457	353	345	97.7337
mlin-fermikit	SNP	tv	func_cds	homalt	99.4152	99.7653	99.0676	23.6994	1700	4	1700	16	14	87.5000
raldana-dualsentieon	SNP	tv	segdup	*	99.5671	99.7656	99.3693	91.0002	8512	20	8508	54	6	11.1111
egarrison-hhga	SNP	tv	*	het	99.8548	99.7659	99.9438	20.8578	590311	1385	590332	332	44	13.2530
hfeng-pmm1	SNP	ti	map_l150_m2_e1	homalt	99.7855	99.7660	99.8049	73.2531	7675	18	7675	15	6	40.0000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.8361	99.7661	99.9062	74.5708	2133	5	2131	2	1	50.0000
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.5795	99.7661	99.3937	76.6906	2133	5	2131	13	5	38.4615
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.6495	99.7661	99.5333	55.1309	853	2	853	4	1	25.0000
ltrigg-rtg2	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	het	99.5345	99.7661	99.3039	36.1103	2133	5	2140	15	2	13.3333
hfeng-pmm1	SNP	tv	map_l250_m1_e0	homalt	99.4179	99.7664	99.0719	87.2031	854	2	854	8	4	50.0000
hfeng-pmm2	SNP	tv	map_l250_m1_e0	homalt	99.4179	99.7664	99.0719	87.2692	854	2	854	8	4	50.0000
gduggal-bwafb	SNP	*	HG002complexvar	*	99.8109	99.7664	99.8554	20.0831	752623	1762	752783	1090	464	42.5688
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	97.1716	99.7669	94.7078	58.2028	856	2	859	48	6	12.5000
ndellapenna-hhga	SNP	*	*	het	99.8554	99.7670	99.9441	18.2036	1869221	4366	1869241	1046	128	12.2371
raldana-dualsentieon	SNP	ti	segdup	het	99.4118	99.7672	99.0589	90.1934	12002	28	12000	114	1	0.8772
egarrison-hhga	SNP	*	map_l100_m2_e0	homalt	99.8491	99.7675	99.9309	63.4300	27459	64	27459	19	18	94.7368
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3011	99.7679	98.8387	65.0271	3869	9	3830	45	3	6.6667
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6651	99.7679	99.5625	58.6903	3869	9	3869	17	0	0.0000
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5424	99.7679	99.3178	59.4259	3869	9	3931	27	1	3.7037
jli-custom	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
ckim-dragen	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.0308	860	2	860	0	0
ckim-dragen	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	22.0308	860	2	860	0	0
gduggal-bwafb	SNP	*	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
gduggal-bwafb	SNP	tv	HG002compoundhet	hetalt	99.8259	99.7680	99.8839	24.0741	860	2	860	1	1	100.0000
gduggal-snapfb	SNP	*	HG002compoundhet	hetalt	97.7828	99.7680	95.8751	27.4859	860	2	860	37	8	21.6216
gduggal-snapfb	SNP	tv	HG002compoundhet	hetalt	97.7828	99.7680	95.8751	27.4859	860	2	860	37	8	21.6216
hfeng-pmm2	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm2	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.2143	860	2	860	0	0
hfeng-pmm1	SNP	*	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0
hfeng-pmm1	SNP	tv	HG002compoundhet	hetalt	99.8839	99.7680	100.0000	23.0769	860	2	860	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge