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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1500 1501 1502 1503 1504 1505 1506 1507 1508 ... 1720 1721 » 75151-75200 / 86044 show all
hfeng-pmm2	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	46.4273	1462	4	1462	0	0
mlin-fermikit	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	98.5516	99.7271	97.4035	50.4781	1462	4	1463	39	31	79.4872
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8634	99.7271	100.0000	43.1128	1462	4	1462	0	0
ltrigg-rtg1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8635	99.7274	100.0000	40.2446	2195	6	2199	0	0
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.5691	99.7274	99.4112	46.0147	2195	6	2195	13	6	46.1538
ndellapenna-hhga	SNP	tv	map_siren	homalt	99.8287	99.7274	99.9303	55.1755	17193	47	17193	12	10	83.3333
raldana-dualsentieon	SNP	*	map_l100_m2_e0	homalt	99.8291	99.7275	99.9308	59.5568	27448	75	27448	19	15	78.9474
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7350	99.7281	99.7420	30.1101	7335	20	7346	19	4	21.0526
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.7012	99.7281	99.6744	30.0294	7335	20	7346	24	4	16.6667
rpoplin-dv42	SNP	ti	map_siren	homalt	99.8060	99.7283	99.8838	52.4445	37813	103	37814	44	42	95.4545
egarrison-hhga	SNP	tv	map_l100_m2_e0	homalt	99.8316	99.7287	99.9347	64.6441	9189	25	9189	6	5	83.3333
ndellapenna-hhga	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8164	99.7288	99.9041	43.6419	6251	17	6252	6	5	83.3333
eyeh-varpipe	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	het	96.0585	99.7289	92.6487	50.1527	11402	31	10889	864	45	5.2083
asubramanian-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8643	99.7290	100.0000	81.9295	368	1	369	0	0
hfeng-pmm1	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8643	99.7290	100.0000	80.4255	368	1	368	0	0
ckim-dragen	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	homalt	99.8643	99.7290	100.0000	82.4038	368	1	366	0	0
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8014	99.7293	99.8736	52.3918	11054	30	11063	14	9	64.2857
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8239	99.7293	99.9186	58.6595	11054	30	11050	9	2	22.2222
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.7634	99.7296	99.7971	53.8905	2951	8	2951	6	1	16.6667
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5783	99.7296	99.4274	58.3882	2951	8	2952	17	2	11.7647
hfeng-pmm3	SNP	ti	map_l100_m0_e0	homalt	99.7684	99.7299	99.8069	62.9000	7753	21	7753	15	6	40.0000
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2837	99.7301	96.8787	61.7262	11453	31	11453	369	356	96.4770
raldana-dualsentieon	SNP	*	map_l100_m2_e1	homalt	99.8307	99.7302	99.9315	59.5367	27721	75	27721	19	15	78.9474
hfeng-pmm2	SNP	tv	map_l150_m2_e0	homalt	99.7184	99.7306	99.7062	74.0814	4072	11	4072	12	4	33.3333
hfeng-pmm1	SNP	tv	map_l150_m2_e0	homalt	99.7184	99.7306	99.7062	73.9873	4072	11	4072	12	4	33.3333
eyeh-varpipe	SNP	tv	map_l150_m2_e0	homalt	99.7787	99.7306	99.8269	76.3785	4072	11	4037	7	3	42.8571
egarrison-hhga	SNP	tv	map_l100_m2_e1	homalt	99.8332	99.7312	99.9354	64.6456	9277	25	9277	6	5	83.3333
hfeng-pmm3	SNP	tv	HG002complexvar	*	99.8576	99.7315	99.9841	21.7544	245491	661	245404	39	15	38.4615
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8440	99.7316	99.9566	64.4687	11521	31	11521	5	4	80.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8440	99.7316	99.9566	64.4687	11521	31	11521	5	4	80.0000
dgrover-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7832	99.7317	99.8347	68.1691	9666	26	9666	16	12	75.0000
eyeh-varpipe	SNP	*	map_l125_m0_e0	homalt	99.7810	99.7318	99.8302	73.0404	6694	18	6469	11	5	45.4545
gduggal-bwafb	SNP	*	HG002complexvar	het	99.7664	99.7319	99.8010	20.1804	464252	1248	464384	926	324	34.9892
jli-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8263	99.7319	99.9210	54.5963	25291	68	25293	20	15	75.0000
astatham-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8303	99.7319	99.9289	55.1102	25291	68	25294	18	12	66.6667
bgallagher-sentieon	SNP	*	HG002compoundhet	het	99.7460	99.7320	99.7601	45.7386	14140	38	14138	34	11	32.3529
ltrigg-rtg1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8661	99.7326	100.0000	52.3748	373	1	371	0	0
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4667	99.7326	99.2021	61.2371	373	1	373	3	2	66.6667
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7326	99.7326	99.7326	58.2589	373	1	373	1	0	0.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8661	99.7326	100.0000	58.3705	373	1	373	0	0
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.1742	99.7330	91.0140	84.2317	1494	4	1499	148	98	66.2162
jli-custom	SNP	tv	map_siren	homalt	99.8403	99.7332	99.9477	52.3546	17194	46	17191	9	9	100.0000
eyeh-varpipe	SNP	tv	map_l125_m1_e0	het	96.7521	99.7334	93.9440	75.6347	10099	27	9990	644	13	2.0186
gduggal-snapfb	SNP	ti	segdup	homalt	99.6936	99.7335	99.6538	89.7294	7485	20	7484	26	9	34.6154
ndellapenna-hhga	SNP	tv	*	het	99.8309	99.7335	99.9285	20.7977	590119	1577	590138	422	45	10.6635
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.8666	99.7336	100.0000	51.5008	2246	6	2246	0	0
ltrigg-rtg1	SNP	tv	map_l150_m2_e1	homalt	99.8426	99.7339	99.9516	72.6103	4123	11	4127	2	2	100.0000
eyeh-varpipe	SNP	tv	map_l150_m2_e1	homalt	99.7814	99.7339	99.8289	76.4129	4123	11	4083	7	3	42.8571
hfeng-pmm1	SNP	tv	map_l150_m2_e1	homalt	99.7219	99.7339	99.7098	73.9872	4123	11	4123	12	4	33.3333
hfeng-pmm2	SNP	tv	map_l150_m2_e1	homalt	99.7219	99.7339	99.7098	74.0785	4123	11	4123	12	4	33.3333

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