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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1499 1500 1501 1502 1503 1504 1505 1506 1507 ... 1720 1721 » 75101-75150 / 86044 show all
ckim-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.4848	99.7211	97.2789	61.7387	715	2	715	20	19	95.0000
jmaeng-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.6207	99.7211	97.5443	61.5021	715	2	715	18	17	94.4444
eyeh-varpipe	SNP	ti	map_l100_m2_e1	*	99.3531	99.7211	98.9878	69.0049	49347	138	48410	495	32	6.4647
astatham-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.5527	99.7211	97.4114	61.5908	715	2	715	19	18	94.7368
hfeng-pmm1	SNP	tv	map_l150_m1_e0	homalt	99.7086	99.7212	99.6960	71.8212	3935	11	3935	12	4	33.3333
hfeng-pmm2	SNP	tv	map_l150_m1_e0	homalt	99.7086	99.7212	99.6960	71.9235	3935	11	3935	12	4	33.3333
eyeh-varpipe	SNP	tv	map_l150_m1_e0	homalt	99.7710	99.7212	99.8208	74.4574	3935	11	3900	7	3	42.8571
egarrison-hhga	INDEL	D1_5	segdup	homalt	99.8605	99.7214	100.0000	94.5201	358	1	358	0	0
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	98.2372	99.7214	96.7966	60.1274	11452	32	11452	379	372	98.1530
ndellapenna-hhga	INDEL	D1_5	segdup	homalt	99.5828	99.7214	99.4444	94.2939	358	1	358	2	2	100.0000
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	*	99.7780	99.7214	99.8347	68.2340	9665	27	9665	16	13	81.2500
jlack-gatk	INDEL	D1_5	segdup	homalt	99.5828	99.7214	99.4444	94.1766	358	1	358	2	2	100.0000
ltrigg-rtg1	SNP	ti	map_l100_m2_e0	homalt	99.8005	99.7214	99.8796	61.9278	18258	51	18258	22	22	100.0000
ltrigg-rtg2	INDEL	D1_5	segdup	homalt	99.8605	99.7214	100.0000	92.9966	358	1	355	0	0
ltrigg-rtg1	SNP	ti	map_l100_m1_e0	homalt	99.8050	99.7216	99.8885	59.4316	17910	50	17910	20	20	100.0000
eyeh-varpipe	SNP	tv	map_l150_m2_e1	*	97.5383	99.7218	95.4485	79.1599	11470	32	11408	544	14	2.5735
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.4553	99.7222	99.1897	69.2866	1436	4	1469	12	1	8.3333
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6530	99.7222	99.5839	69.2078	1436	4	1436	6	0	0.0000
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.5149	99.7222	99.3084	87.5709	718	2	718	5	4	80.0000
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.5839	99.7222	99.4460	87.8981	718	2	718	4	4	100.0000
raldana-dualsentieon	SNP	*	map_l100_m1_e0	homalt	99.8258	99.7223	99.9295	56.9722	26928	75	26928	19	15	78.9474
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8483	99.7230	99.9740	62.7618	11520	32	11520	3	3	100.0000
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8483	99.7230	99.9740	62.7618	11520	32	11520	3	3	100.0000
rpoplin-dv42	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7230	99.7230	99.7230	60.8884	360	1	360	1	0	0.0000
jlack-gatk	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5851	99.7230	99.4475	62.7955	360	1	360	2	1	50.0000
hfeng-pmm3	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5851	99.7230	99.4475	61.4072	360	1	360	2	1	50.0000
jli-custom	INDEL	D16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.5851	99.7230	99.4475	61.2420	360	1	360	2	1	50.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8378	99.7231	99.9528	67.2930	16928	47	16928	8	6	75.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8378	99.7231	99.9528	67.2930	16928	47	16928	8	6	75.0000
ckim-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5960	99.7232	99.4692	61.2535	55477	154	55466	296	29	9.7973
egarrison-hhga	SNP	tv	map_l100_m1_e0	homalt	99.8284	99.7235	99.9335	62.1365	9018	25	9018	6	5	83.3333
hfeng-pmm1	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6415	99.7240	99.5592	34.7388	7227	20	7227	32	32	100.0000
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8619	99.7241	100.0000	34.3461	3976	11	3976	0	0
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8493	99.7241	99.9749	34.2862	3976	11	3976	1	1	100.0000
ltrigg-rtg1	SNP	ti	map_l100_m2_e1	homalt	99.8025	99.7242	99.8809	61.9106	18443	51	18443	22	22	100.0000
ckim-vqsr	SNP	ti	func_cds	*	99.7642	99.7244	99.8040	29.1716	13749	38	13747	27	0	0.0000
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	98.7571	99.7248	97.8080	67.5218	18116	50	18116	406	393	96.7980
ckim-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	98.7571	99.7248	97.8080	67.5218	18116	50	18116	406	393	96.7980
hfeng-pmm3	SNP	*	map_l150_m1_e0	homalt	99.7427	99.7250	99.7604	71.2100	11242	31	11242	27	10	37.0370
ckim-dragen	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	96.9398	99.7251	94.3058	66.7272	3628	10	3627	219	217	99.0868
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1026	99.7251	98.4878	62.3729	6167	17	6122	94	6	6.3830
hfeng-pmm2	SNP	ti	segdup	het	99.5229	99.7257	99.3210	90.4269	11997	33	11995	82	0	0.0000
jli-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8263	99.7261	99.9268	57.6141	16384	45	16382	12	5	41.6667
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7777	99.7261	99.8294	60.1055	16384	45	16383	28	4	14.2857
ckim-gatk	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6452	99.7262	99.5644	75.3068	33145	91	33139	145	104	71.7241
ckim-dragen	SNP	ti	HG002compoundhet	het	99.7319	99.7265	99.7373	40.1998	9479	26	9491	25	5	20.0000
jli-custom	SNP	ti	HG002compoundhet	het	99.6793	99.7265	99.6321	39.4553	9479	26	9479	35	14	40.0000
raldana-dualsentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.9826	99.7269	96.2982	53.7111	9495	26	9495	365	360	98.6301
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.6997	99.7269	99.6725	54.7543	1826	5	1826	6	1	16.6667
hfeng-pmm3	SNP	tv	map_l125_m1_e0	homalt	99.7525	99.7270	99.7780	67.2958	5844	16	5844	13	5	38.4615

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