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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1495 1496 1497 1498 1499 1500 1501 1502 1503 ... 1720 1721 » 74901-74950 / 86044 show all
ckim-dragen	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.3094	99.6937	95.0365	73.7548	651	2	651	34	34	100.0000
hfeng-pmm1	INDEL	I6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.4871	99.6937	97.3094	71.3122	651	2	651	18	17	94.4444
hfeng-pmm1	SNP	*	segdup	het	99.6248	99.6939	99.5558	89.5848	17264	53	17258	77	0	0.0000
eyeh-varpipe	SNP	*	map_l125_m2_e0	*	98.7944	99.6939	97.9109	74.9243	46580	143	45227	965	38	3.9378
gduggal-bwafb	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	84.2433	326	1	326	3	1	33.3333
ndellapenna-hhga	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	83.4507	326	1	326	3	1	33.3333
dgrover-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	83.5088	326	1	326	3	2	66.6667
ckim-vqsr	INDEL	I1_5	map_l125_m1_e0	homalt	99.5420	99.6942	99.3902	83.8741	326	1	326	2	1	50.0000
ckim-gatk	INDEL	I1_5	map_l125_m1_e0	homalt	99.3902	99.6942	99.0881	83.8329	326	1	326	3	2	66.6667
ckim-dragen	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.6949	100.0000	33.7893	1307	4	1307	0	0
eyeh-varpipe	SNP	*	map_l125_m2_e1	*	98.7976	99.6949	97.9163	74.9861	47058	144	45676	972	38	3.9095
egarrison-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8472	99.6949	100.0000	35.4886	1307	4	1307	0	0
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.8131	99.6954	99.9311	54.3062	10147	31	10148	7	7	100.0000
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6198	99.6956	99.5441	79.9635	655	2	655	3	3	100.0000
qzeng-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4948	99.6956	99.2948	79.7023	655	2	704	5	3	60.0000
gduggal-bwavard	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	93.0462	99.6956	87.2283	80.4151	655	2	642	94	57	60.6383
jlack-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6198	99.6956	99.5441	80.5441	655	2	655	3	1	33.3333
hfeng-pmm3	SNP	*	map_siren	*	99.7673	99.6957	99.8390	54.1028	145783	445	145760	235	40	17.0213
gduggal-bwafb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.9766	99.6958	96.3156	68.1284	2950	9	2954	113	5	4.4248
bgallagher-sentieon	INDEL	I1_5	HG002compoundhet	homalt	66.5990	99.6960	50.0000	87.6390	328	1	328	328	328	100.0000
astatham-gatk	INDEL	I1_5	HG002compoundhet	homalt	72.9700	99.6960	57.5439	88.3697	328	1	328	242	242	100.0000
dgrover-gatk	INDEL	I1_5	HG002compoundhet	homalt	73.8739	99.6960	58.6762	88.9153	328	1	328	231	231	100.0000
ckim-vqsr	INDEL	I1_5	HG002compoundhet	homalt	73.9572	99.6960	58.7814	88.6470	328	1	328	230	230	100.0000
ckim-gatk	INDEL	I1_5	HG002compoundhet	homalt	73.8739	99.6960	58.6762	88.6290	328	1	328	231	231	100.0000
jli-custom	INDEL	I1_5	HG002compoundhet	homalt	83.7803	99.6960	72.2467	88.6301	328	1	328	126	125	99.2063
ckim-vqsr	INDEL	D1_5	*	het	99.6940	99.6963	99.6917	60.8657	87308	266	87313	270	118	43.7037
dgrover-gatk	INDEL	D1_5	HG002complexvar	het	99.8048	99.6966	99.9132	56.2931	20702	63	20710	18	11	61.1111
gduggal-bwafb	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.2360	99.6967	98.7794	42.1600	4602	14	4613	57	9	15.7895
cchapple-custom	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.5568	99.6967	99.4174	37.3360	4602	14	4607	27	8	29.6296
ckim-dragen	SNP	*	HG002compoundhet	het	99.7322	99.6967	99.7677	46.4046	14135	43	14173	33	8	24.2424
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.7011	99.6968	99.7054	51.0387	11839	36	11844	35	16	45.7143
egarrison-hhga	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7960	99.6973	99.8950	55.4424	17125	52	17126	18	14	77.7778
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	99.5467	99.6973	99.3965	52.0107	4282	13	4282	26	1	3.8462
jli-custom	SNP	tv	segdup	het	99.3872	99.6974	99.0789	90.9422	5271	16	5271	49	0	0.0000
hfeng-pmm3	SNP	tv	segdup	het	99.6218	99.6974	99.5464	90.8847	5271	16	5267	24	0	0.0000
jmaeng-gatk	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6389	99.6975	99.5803	59.3397	17797	54	17796	75	5	6.6667
hfeng-pmm3	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8394	99.6976	99.9816	59.7625	10878	33	10875	2	1	50.0000
hfeng-pmm1	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6018	99.6976	99.5062	56.7205	3627	11	3627	18	18	100.0000
eyeh-varpipe	SNP	tv	map_l150_m1_e0	het	96.1715	99.6977	92.8862	79.2854	6925	21	6855	525	11	2.0952
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5601	99.6979	99.4226	63.8015	35312	107	35301	205	16	7.8049
ltrigg-rtg2	SNP	ti	segdup	*	99.2028	99.6980	98.7126	86.7471	19478	59	19475	254	32	12.5984
jmaeng-gatk	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4801	99.6983	99.2628	67.4240	17515	53	17505	130	11	8.4615
hfeng-pmm3	SNP	tv	map_l150_m0_e0	homalt	99.4741	99.6988	99.2504	78.1634	1324	4	1324	10	3	30.0000
cchapple-custom	SNP	ti	HG002complexvar	het	99.7945	99.6988	99.8903	17.3501	313818	948	313318	344	249	72.3837
asubramanian-gatk	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7217	99.6990	99.7443	56.4874	11262	34	11313	29	10	34.4828
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.6460	99.6990	99.5931	55.9882	11262	34	11258	46	37	80.4348
bgallagher-sentieon	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.6226	99.6991	99.5463	74.7408	33136	100	33130	151	120	79.4702
ltrigg-rtg2	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.8494	99.6992	100.0000	33.0461	1326	4	1321	0	0
ckim-dragen	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.7127	99.6993	99.7261	53.8549	3647	11	3641	10	3	30.0000
hfeng-pmm2	SNP	tv	map_siren	*	99.6626	99.6995	99.6257	59.0414	45792	138	45784	172	23	13.3721

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