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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74851-74900 / 86044 show all
gduggal-snapfbSNP*HG002complexvarhomalt
99.5552
99.6857
99.4250
21.2913
2876689072877331664399
23.9784
ltrigg-rtg2INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3235
99.6859
98.9637
77.1327
9523955101
10.0000
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.7904
99.6859
99.8951
79.4035
952395211
100.0000
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.6356
99.6862
97.6069
67.4063
181095718109444421
94.8198
jmaeng-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.6356
99.6862
97.6069
67.4063
181095718109444421
94.8198
astatham-gatkSNP*func_cdshet
99.7982
99.6864
99.9102
26.1346
111263511123100
0.0000
ckim-gatkINDELI1_5HG002complexvarhet
99.7716
99.6866
99.8566
58.0913
1813257181102613
50.0000
eyeh-varpipeSNP*map_l125_m1_e0*
98.7938
99.6867
97.9168
73.3897
451851424385393338
4.0729
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
97.3719
99.6869
95.1620
62.9872
17513551638583363
7.5630
cchapple-customSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.0130
99.6869
98.3480
64.2091
17513551762229623
7.7703
dgrover-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.6271
99.6871
99.5672
75.3638
3313210433126144110
76.3889
cchapple-customSNP*HG002complexvarhet
99.7839
99.6872
99.8808
18.7433
4640411456463256553394
71.2477
eyeh-varpipeINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
73.8882
99.6873
58.6974
39.9145
510116520036593622
98.9888
jmaeng-gatkSNP*lowcmp_SimpleRepeat_triTR_11to50*
99.7211
99.6873
99.7550
36.7324
7332237328184
22.2222
ltrigg-rtg2SNP*map_l100_m2_e0homalt
99.8108
99.6875
99.9344
60.3899
2743786274351816
88.8889
jli-customINDEL*segduphomalt
99.4802
99.6875
99.2739
93.3014
957395776
85.7143
hfeng-pmm2SNPtvmap_l100_m0_e0homalt
99.6880
99.6880
99.6880
65.5500
3834123834124
33.3333
hfeng-pmm1SNPtvmap_l100_m0_e0homalt
99.6880
99.6880
99.6880
65.4385
3834123834124
33.3333
hfeng-pmm3SNPtimap_siren*
99.7701
99.6881
99.8523
52.8057
10004231310002714825
16.8919
bgallagher-sentieonINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7548
99.6881
99.8216
48.8361
6712216714128
66.6667
astatham-gatkINDEL*lowcmp_SimpleRepeat_triTR_11to50*
99.7622
99.6881
99.8364
49.1224
6712216714116
54.5455
rpoplin-dv42SNP*map_sirenhomalt
99.7831
99.6882
99.8783
53.6066
54984172549836763
94.0299
hfeng-pmm1SNPtvlowcmp_SimpleRepeat_homopolymer_6to10*
99.8348
99.6884
99.9816
59.7111
10877341087421
50.0000
hfeng-pmm2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6885
99.9447
54.6733
2528079252811410
71.4286
jmaeng-gatkSNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.4232
99.6886
99.1593
46.1734
6723216723571
1.7544
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.8444
99.6892
100.0000
52.3753
16045160400
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7512
99.6892
99.8133
54.3984
16045160432
66.6667
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.7823
99.6892
99.8755
54.6328
16045160421
50.0000
ckim-gatkSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.5094
99.6893
99.3302
65.3964
27592862758218618
9.6774
ckim-dragenSNPtilowcmp_SimpleRepeat_diTR_11to50*
99.7111
99.6899
99.7323
69.3066
48221548431310
76.9231
hfeng-pmm1SNPtiHG002complexvarhet
99.8377
99.6899
99.9860
16.6225
3137909763137394410
22.7273
hfeng-pmm3SNP*map_l100_m0_e0homalt
99.7288
99.6902
99.7675
63.7304
1158436115842710
37.0370
bgallagher-sentieonSNP*map_siren*
99.5992
99.6902
99.5084
55.5562
145775453145752720102
14.1667
ltrigg-rtg2SNP*map_l100_m2_e1homalt
99.8127
99.6906
99.9351
60.3846
2771086277081816
88.8889
hfeng-pmm1INDEL*lowcmp_SimpleRepeat_diTR_11to50homalt
99.5421
99.6910
99.3935
43.8031
1032532103256362
98.4127
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.8164
99.6914
99.9417
52.6220
171245317138107
70.0000
dgrover-gatkSNPtimap_sirenhomalt
99.8204
99.6914
99.9498
49.0891
37799117377931917
89.4737
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
ckim-vqsrINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
98.7459
99.6917
97.8179
67.5313
181105618110404391
96.7822
egarrison-hhgaSNP*map_l125_m1_e0homalt
99.8075
99.6924
99.9229
66.3441
1685352168531313
100.0000
gduggal-bwafbSNP*segduphomalt
99.7625
99.6928
99.8322
89.4414
1071033107101818
100.0000
ltrigg-rtg2SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7441
99.6928
99.7955
25.9231
389412390481
12.5000
hfeng-pmm3SNPtilowcmp_SimpleRepeat_triTR_11to50*
99.8206
99.6928
99.9487
29.2204
389412389321
50.0000
hfeng-pmm2SNPtiHG002complexvarhet
99.8373
99.6928
99.9822
16.6591
313799967313749567
12.5000
raldana-dualsentieonSNPtiHG002complexvarhet
99.8369
99.6928
99.9815
16.7345
313799967313748589
15.5172
ghariani-varprowlSNPtisegdup*
98.2251
99.6929
96.7998
91.5895
19477601948064438
5.9006
cchapple-customSNPtiHG002complexvar*
99.8096
99.6932
99.9263
17.3694
5068761560505502373274
73.4584
jli-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10het
99.8148
99.6933
99.9367
55.5774
11050341104874
57.1429
jpowers-varprowlSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
94.4849
99.6935
89.7936
83.3014
3903123915445231
51.9101
cchapple-customINDELI6_15lowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
98.1825
99.6937
96.7164
71.0458
65126482221
95.4545