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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1492 1493 1494 1495 1496 1497 1498 1499 1500 ... 1720 1721 » 74751-74800 / 86044 show all
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.2657	99.6737	96.8970	47.8485	2749	9	2748	88	17	19.3182
jmaeng-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8292	99.6738	99.9851	35.1779	6723	22	6723	1	1	100.0000
jlack-gatk	SNP	ti	HG002compoundhet	het	99.4749	99.6739	99.2768	41.5881	9474	31	9472	69	16	23.1884
hfeng-pmm2	SNP	ti	map_l150_m0_e0	homalt	99.6019	99.6740	99.5298	75.8368	2752	9	2752	13	5	38.4615
hfeng-pmm3	SNP	ti	map_l150_m0_e0	homalt	99.6199	99.6740	99.5658	75.7331	2752	9	2752	12	4	33.3333
hfeng-pmm1	SNP	ti	map_l150_m0_e0	homalt	99.6199	99.6740	99.5658	75.8370	2752	9	2752	12	4	33.3333
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7905	99.6747	99.9066	41.3311	2145	7	2140	2	1	50.0000
ltrigg-rtg1	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6541	99.6750	99.6331	31.4341	4601	15	4616	17	2	11.7647
ltrigg-rtg2	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6003	99.6750	99.5257	31.5929	4601	15	4616	22	2	9.0909
eyeh-varpipe	SNP	*	map_l250_m1_e0	homalt	99.7542	99.6752	99.8333	88.3918	2455	8	2396	4	4	100.0000
ndellapenna-hhga	SNP	ti	HG002complexvar	*	99.8069	99.6755	99.9387	17.4775	506786	1650	506808	311	223	71.7042
ndellapenna-hhga	SNP	ti	map_l100_m2_e1	homalt	99.7970	99.6756	99.9187	61.7788	18434	60	18434	15	15	100.0000
astatham-gatk	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5144	99.6757	99.3536	78.0162	1537	5	1537	10	5	50.0000
bgallagher-sentieon	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5466	99.6757	99.4179	77.8922	1537	5	1537	9	5	55.5556
raldana-dualsentieon	SNP	tv	map_l125_m1_e0	homalt	99.7865	99.6758	99.8974	63.2172	5841	19	5841	6	3	50.0000
hfeng-pmm3	SNP	*	HG002complexvar	het	99.8290	99.6758	99.9825	18.2080	463988	1509	463859	81	16	19.7531
hfeng-pmm2	SNP	*	map_siren	*	99.6789	99.6758	99.6819	56.1450	145754	474	145731	465	62	13.3333
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.1805	99.6759	98.6901	56.5693	3998	13	3993	53	5	9.4340
ckim-vqsr	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6600	99.6762	99.6439	69.2790	3078	10	3078	11	9	81.8182
jli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.6439	99.6762	99.6117	68.6485	3078	10	3078	12	8	66.6667
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	het	99.7576	99.6772	99.8383	36.6060	2470	8	2469	4	0	0.0000
ltrigg-rtg2	SNP	*	HG002complexvar	hetalt	99.0410	99.6774	98.4127	37.6238	309	1	310	5	5	100.0000
ltrigg-rtg2	SNP	tv	HG002complexvar	hetalt	99.0410	99.6774	98.4127	37.6238	309	1	310	5	5	100.0000
rpoplin-dv42	SNP	*	HG002complexvar	hetalt	99.1974	99.6774	98.7220	36.2525	309	1	309	4	4	100.0000
rpoplin-dv42	SNP	tv	HG002complexvar	hetalt	99.1974	99.6774	98.7220	36.2525	309	1	309	4	4	100.0000
rpoplin-dv42	INDEL	D1_5	map_l100_m2_e1	homalt	99.3569	99.6774	99.0385	83.3511	618	2	618	6	5	83.3333
ckim-dragen	SNP	*	HG002complexvar	hetalt	99.8384	99.6774	100.0000	39.2996	309	1	312	0	0
ckim-dragen	SNP	tv	HG002complexvar	hetalt	99.8384	99.6774	100.0000	39.2996	309	1	312	0	0
ckim-gatk	INDEL	I1_5	*	het	99.5633	99.6774	99.4495	61.8943	78786	255	78766	436	147	33.7156
gduggal-snapfb	SNP	*	HG002complexvar	hetalt	82.4000	99.6774	70.2273	54.9642	309	1	309	131	28	21.3740
gduggal-snapfb	SNP	tv	HG002complexvar	hetalt	82.4000	99.6774	70.2273	54.9642	309	1	309	131	28	21.3740
eyeh-varpipe	SNP	*	HG002complexvar	hetalt	99.7172	99.6774	99.7570	25.7273	309	1	6978	17	16	94.1176
eyeh-varpipe	SNP	tv	HG002complexvar	hetalt	99.6700	99.6774	99.6626	29.8422	309	1	3545	12	11	91.6667
gduggal-bwafb	SNP	*	HG002complexvar	hetalt	99.3569	99.6774	99.0385	46.2069	309	1	309	3	3	100.0000
gduggal-bwafb	SNP	tv	HG002complexvar	hetalt	99.3569	99.6774	99.0385	46.2069	309	1	309	3	3	100.0000
ltrigg-rtg2	SNP	ti	map_l100_m2_e0	homalt	99.8031	99.6778	99.9288	59.8461	18250	59	18249	13	13	100.0000
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	98.8353	99.6779	98.0069	41.1938	7428	24	7425	151	1	0.6623
ckim-gatk	SNP	ti	*	het	99.7182	99.6780	99.7585	24.7182	1277763	4128	1277713	3093	133	4.3000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	98.0773	99.6780	96.5272	70.4668	2167	7	2168	78	5	6.4103
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5635	99.6780	99.4493	63.4150	2167	7	2167	12	0	0.0000
cchapple-custom	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.3690	99.6782	99.0618	71.6714	30662	99	30621	290	283	97.5862
raldana-dualsentieon	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	95.0920	99.6785	90.9091	69.4991	310	1	310	31	30	96.7742
hfeng-pmm1	SNP	tv	segdup	het	99.6406	99.6785	99.6028	90.6534	5270	17	5266	21	0	0.0000
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	94.8012	99.6785	90.3790	71.4642	310	1	310	33	33	100.0000
ltrigg-rtg1	SNP	*	HG002complexvar	het	99.8148	99.6788	99.9511	18.4181	464005	1495	464235	227	59	25.9912
dgrover-gatk	SNP	tv	HG002compoundhet	het	99.6470	99.6790	99.6151	55.4242	4658	15	4658	18	10	55.5556
dgrover-gatk	SNP	*	map_siren	homalt	99.8121	99.6791	99.9455	50.4067	54979	177	54970	30	26	86.6667
egarrison-hhga	SNP	*	segdup	*	99.6030	99.6793	99.5269	89.4388	27977	90	27977	133	40	30.0752
cchapple-custom	SNP	*	HG002complexvar	*	99.8003	99.6796	99.9214	18.6735	751964	2417	749599	590	426	72.2034
ckim-gatk	INDEL	I16_PLUS	*	homalt	97.7080	99.6797	95.8128	71.8495	1556	5	1556	68	67	98.5294

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