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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1489 1490 1491 1492 1493 1494 1495 1496 1497 ... 1720 1721 » 74601-74650 / 86044 show all
jli-custom	INDEL	D1_5	HG002compoundhet	homalt	86.9565	99.6564	77.1277	84.9600	290	1	290	86	84	97.6744
hfeng-pmm2	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	47.9821	580	2	580	0	0
jlack-gatk	INDEL	D1_5	HG002compoundhet	homalt	69.2124	99.6564	53.0165	77.8632	290	1	290	257	257	100.0000
astatham-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	39.9586	580	2	580	0	0
bgallagher-sentieon	INDEL	D1_5	HG002compoundhet	homalt	72.9560	99.6564	57.5397	87.1560	290	1	290	214	213	99.5327
astatham-gatk	INDEL	D1_5	HG002compoundhet	homalt	79.6703	99.6564	66.3616	87.7109	290	1	290	147	146	99.3197
raldana-dualsentieon	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	37.7278	580	2	580	1	1	100.0000
raldana-dualsentieon	INDEL	D1_5	HG002compoundhet	homalt	77.2304	99.6564	63.0435	84.6769	290	1	290	170	169	99.4118
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7872	99.6565	99.9183	57.2121	17118	59	17114	14	8	57.1429
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_triTR_11to50	*	99.7790	99.6566	99.9017	44.3228	4063	14	4066	4	1	25.0000
ckim-vqsr	SNP	tv	func_cds	*	99.7367	99.6568	99.8166	38.6616	4356	15	4355	8	0	0.0000
ghariani-varprowl	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	97.4028	99.6568	95.2485	71.4664	1742	6	1744	87	49	56.3218
ghariani-varprowl	SNP	tv	func_cds	*	99.2142	99.6568	98.7755	38.2266	4356	15	4356	54	5	9.2593
jpowers-varprowl	SNP	*	lowcmp_AllRepeats_51to200bp_gt95identity_merged	homalt	96.4333	99.6568	93.4119	74.1305	1742	6	1744	123	51	41.4634
hfeng-pmm2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.7892	99.6568	99.9219	57.6377	28163	97	28165	22	14	63.6364
hfeng-pmm3	SNP	tv	map_l150_m2_e0	homalt	99.6815	99.6571	99.7060	73.9183	4069	14	4069	12	4	33.3333
bgallagher-sentieon	SNP	tv	map_l100_m1_e0	homalt	99.7786	99.6572	99.9002	59.2105	9012	31	9012	9	6	66.6667
hfeng-pmm2	SNP	*	map_l125_m0_e0	homalt	99.6276	99.6573	99.5980	70.8911	6689	23	6689	27	10	37.0370
hfeng-pmm2	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	78.7708	1164	4	1167	4	4	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.5754	582	2	583	0	0
astatham-gatk	INDEL	D1_5	map_siren	homalt	99.6154	99.6575	99.5734	81.2660	1164	4	1167	5	4	80.0000
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.3473	582	2	583	0	0
bgallagher-sentieon	INDEL	D1_5	map_siren	homalt	99.6580	99.6575	99.6584	81.1615	1164	4	1167	4	4	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.8285	99.6575	100.0000	18.1180	582	2	583	0	0
ltrigg-rtg1	INDEL	D1_5	map_siren	homalt	99.7001	99.6575	99.7427	77.3460	1164	4	1163	3	2	66.6667
bgallagher-sentieon	SNP	tv	HG002compoundhet	het	99.6043	99.6576	99.5511	55.0192	4657	16	4657	21	5	23.8095
eyeh-varpipe	SNP	*	map_l150_m2_e0	*	98.5884	99.6578	97.5418	78.8388	31743	109	30831	777	30	3.8610
ckim-dragen	INDEL	D6_15	HG002complexvar	homalt	98.2293	99.6578	96.8412	63.9172	1165	4	1165	38	37	97.3684
jmaeng-gatk	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8116	99.6584	99.9652	56.5451	20130	69	20130	7	7	100.0000
egarrison-hhga	SNP	ti	map_l150_m2_e0	homalt	99.7831	99.6586	99.9079	73.1839	7590	26	7590	7	7	100.0000
egarrison-hhga	SNP	tv	map_l125_m1_e0	homalt	99.7864	99.6587	99.9145	66.8895	5840	20	5840	5	5	100.0000
ndellapenna-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.7270	99.6589	99.7951	46.6278	1461	5	1461	3	3	100.0000
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.8292	99.6590	100.0000	35.1158	6722	23	6722	0	0
bgallagher-sentieon	INDEL	I1_5	HG002complexvar	het	99.7743	99.6591	99.8897	57.8575	18127	62	18108	20	10	50.0000
jli-custom	SNP	ti	map_l100_m2_e1	homalt	99.7997	99.6593	99.9404	59.0260	18431	63	18431	11	11	100.0000
raldana-dualsentieon	SNP	tv	segdup	het	99.3773	99.6595	99.0966	91.7904	5269	18	5265	48	0	0.0000
eyeh-varpipe	SNP	ti	map_l125_m2_e0	*	99.2792	99.6596	98.9018	74.7286	30155	103	29629	329	21	6.3830
eyeh-varpipe	SNP	ti	map_l125_m2_e1	*	99.2798	99.6598	98.9027	74.7802	30465	104	29925	332	21	6.3253
gduggal-snapfb	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	95.5647	99.6601	91.7926	43.5950	7330	25	7348	657	15	2.2831
gduggal-snapfb	SNP	tv	segdup	homalt	99.3840	99.6603	99.1093	91.8109	3227	11	3227	29	8	27.5862
hfeng-pmm2	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8016	99.6604	99.9432	62.6695	1761	6	1761	1	1	100.0000
ltrigg-rtg1	SNP	*	map_l125_m2_e0	homalt	99.7839	99.6604	99.9077	68.1589	17316	59	17317	16	16	100.0000
jmaeng-gatk	SNP	tv	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8072	99.6609	99.9540	61.5860	10874	37	10870	5	2	40.0000
raldana-dualsentieon	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.8006	99.6609	99.9407	54.5675	25273	86	25275	15	11	73.3333
qzeng-custom	SNP	tv	func_cds	het	99.5488	99.6613	99.4365	40.8444	2648	9	2647	15	0	0.0000
hfeng-pmm3	SNP	tv	map_l150_m2_e1	homalt	99.6855	99.6613	99.7096	73.9141	4120	14	4120	12	4	33.3333
jli-custom	SNP	*	HG002compoundhet	het	99.6122	99.6614	99.5631	45.6634	14130	48	14128	62	24	38.7097
jli-custom	SNP	ti	map_l100_m2_e0	homalt	99.8004	99.6614	99.9398	59.0453	18247	62	18247	11	11	100.0000
eyeh-varpipe	SNP	*	map_l150_m2_e1	*	98.5942	99.6616	97.5494	78.9029	32101	109	31168	783	30	3.8314
ckim-gatk	INDEL	*	*	het	99.4669	99.6616	99.2730	62.2737	193476	657	193095	1414	578	40.8769

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