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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1488 1489 1490 1491 1492 1493 1494 1495 1496 ... 1720 1721 » 74551-74600 / 86044 show all
ckim-gatk	SNP	*	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.8116	99.6527	99.9710	62.5408	3443	12	3443	1	1	100.0000
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
bgallagher-sentieon	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	68.9860	574	2	574	1	1	100.0000
jlack-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5663	99.6528	99.4801	69.4386	574	2	574	3	1	33.3333
jli-custom	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	66.3743	574	2	574	1	1	100.0000
gduggal-bwafb	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	98.5924	99.6528	97.5543	73.9929	1435	5	1436	36	3	8.3333
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.5146	99.6528	99.3767	68.2498	1435	5	1435	9	0	0.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6528	99.6528	99.6528	69.7320	574	2	574	2	2	100.0000
dgrover-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	69.1854	574	2	574	1	1	100.0000
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.7394	99.6528	99.8261	70.1454	574	2	574	1	1	100.0000
rpoplin-dv42	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7077	99.6531	99.7624	58.0995	16372	57	16373	39	28	71.7949
bgallagher-sentieon	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	*	99.7686	99.6532	99.8842	35.8231	1724	6	1725	2	2	100.0000
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.8016	99.6534	99.9503	52.1900	20129	70	20107	10	3	30.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.8049	99.6537	99.9566	69.9831	11512	40	11514	5	2	40.0000
rpoplin-dv42	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.8049	99.6537	99.9566	69.9831	11512	40	11514	5	2	40.0000
raldana-dualsentieon	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.4966	577	2	577	0	0
ndellapenna-hhga	SNP	*	map_l100_m2_e1	homalt	99.7857	99.6546	99.9170	62.4746	27700	96	27700	23	21	91.3043
jli-custom	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
hfeng-pmm2	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.7577	577	2	577	0	0
hfeng-pmm3	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.4462	577	2	577	0	0
hfeng-pmm1	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.5503	577	2	577	0	0
astatham-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	21.9215	577	2	577	0	0
dgrover-gatk	SNP	ti	HG002compoundhet	hetalt	99.8270	99.6546	100.0000	22.2372	577	2	577	0	0
jli-custom	SNP	ti	map_l100_m1_e0	homalt	99.7965	99.6548	99.9386	56.4067	17898	62	17898	11	11	100.0000
ltrigg-rtg1	SNP	*	*	hetalt	99.2007	99.6556	98.7500	40.5405	868	3	869	11	11	100.0000
ltrigg-rtg1	SNP	tv	*	hetalt	99.2007	99.6556	98.7500	40.5405	868	3	869	11	11	100.0000
jmaeng-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7660	99.6556	99.8767	49.4516	4051	14	4051	5	1	20.0000
dgrover-gatk	SNP	*	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
dgrover-gatk	SNP	tv	*	hetalt	99.8275	99.6556	100.0000	41.6667	868	3	868	0	0
ckim-gatk	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7906	99.6556	99.9260	49.2362	4051	14	4051	3	1	33.3333
cchapple-custom	SNP	*	*	hetalt	0.0000	99.6556	0.0000	0.0000	868	3	0	0	0
cchapple-custom	SNP	tv	*	hetalt	0.0000	99.6556	0.0000	0.0000	868	3	0	0	0
raldana-dualsentieon	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7906	99.6556	99.9260	45.0901	4051	14	4051	3	1	33.3333
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.8275	99.6556	100.0000	44.5296	4051	14	4051	0	0
gduggal-snapfb	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.2893	99.6556	98.9258	48.4715	4051	14	4052	44	5	11.3636
ghariani-varprowl	SNP	ti	lowcmp_SimpleRepeat_homopolymer_6to10	het	98.7332	99.6556	97.8277	50.1744	4051	14	4053	90	0	0.0000
dgrover-gatk	INDEL	*	*	het	99.5990	99.6559	99.5422	61.2168	193465	668	193091	888	555	62.5000
gduggal-bwafb	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.7100	99.6561	99.7639	53.8981	10143	35	10141	24	24	100.0000
ckim-gatk	SNP	*	*	het	99.6800	99.6561	99.7039	26.8036	1867144	6443	1867021	5544	194	3.4993
ckim-gatk	INDEL	D1_5	HG002compoundhet	homalt	79.0191	99.6564	65.4628	87.5701	290	1	290	153	152	99.3464
ckim-dragen	INDEL	D1_5	HG002compoundhet	homalt	66.9786	99.6564	50.4394	90.3836	290	1	287	282	281	99.6454
jmaeng-gatk	INDEL	D1_5	HG002compoundhet	homalt	78.1671	99.6564	64.3016	87.6742	290	1	290	161	160	99.3789
jli-custom	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	42.8150	580	2	580	1	1	100.0000
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4393	99.6564	99.2231	66.7595	31036	107	31036	243	19	7.8189
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.4393	99.6564	99.2231	66.7595	31036	107	31036	243	19	7.8189
ckim-vqsr	INDEL	D1_5	HG002compoundhet	homalt	79.0191	99.6564	65.4628	87.5701	290	1	290	153	152	99.3464
dgrover-gatk	SNP	ti	*	hetalt	99.8279	99.6564	100.0000	41.2361	580	2	580	0	0
dgrover-gatk	INDEL	D1_5	HG002compoundhet	homalt	80.0000	99.6564	66.8203	87.9210	290	1	290	144	143	99.3056
hfeng-pmm1	SNP	ti	*	hetalt	99.5708	99.6564	99.4854	47.7130	580	2	580	3	3	100.0000
hfeng-pmm3	SNP	ti	*	hetalt	99.7420	99.6564	99.8279	45.8022	580	2	580	1	1	100.0000

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