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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
74201-74250 / 86044 show all
ckim-vqsrSNPtvlowcmp_SimpleRepeat_diTR_11to50*
99.6806
99.6087
99.7525
66.7490
48371948371210
83.3333
ckim-gatkSNPtv*het
99.5973
99.6088
99.5858
30.9441
5893812315589308245161
2.4888
ckim-dragenINDELI1_5*het
99.4703
99.6091
99.3319
60.8221
7873230978650529129
24.3856
ndellapenna-hhgaSNPtvmap_l100_m2_e0homalt
99.7609
99.6093
99.9129
63.7805
917836917886
75.0000
ltrigg-rtg1SNP*lowcmp_SimpleRepeat_quadTR_11to50*
99.3427
99.6095
99.0772
37.9144
1811271181451693
1.7752
ltrigg-rtg2SNPtvmap_l100_m0_e0homalt
99.7656
99.6100
99.9217
59.8070
383115382931
33.3333
hfeng-pmm3SNPtvmap_l100_m0_e0homalt
99.6488
99.6100
99.6877
65.3002
3831153831124
33.3333
ltrigg-rtg1INDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7960
99.6105
99.9822
54.2557
11252441122022
100.0000
gduggal-snapfbSNP*HG002complexvar*
99.1200
99.6105
98.6343
21.7486
7514472938752277104161326
12.7304
dgrover-gatkSNPtimap_sirenhet
99.5897
99.6105
99.5689
58.1271
621392436213026951
18.9591
dgrover-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.4819
99.6109
99.3532
78.1854
153661536105
50.0000
ckim-dragenINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5453
99.6109
99.4798
78.1348
15366153085
62.5000
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.2014
99.6118
98.7944
67.9415
19503761950323815
6.3025
jli-customSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.2014
99.6118
98.7944
67.9415
19503761950323815
6.3025
jmaeng-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.7409
99.6119
99.8703
78.8245
770377010
0.0000
ckim-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.6563
770377020
0.0000
hfeng-pmm1INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6119
99.6119
99.6119
77.7554
770377030
0.0000
hfeng-pmm3INDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6119
99.6119
99.6119
77.7426
770377030
0.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.2474
770377020
0.0000
astatham-gatkINDELD1_5lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.5983
99.6119
99.5848
74.9525
3310712933101138106
76.8116
astatham-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.4116
770377020
0.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.6681
770377020
0.0000
ckim-vqsrINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_mergedhet
99.6764
99.6119
99.7409
78.6563
770377020
0.0000
hfeng-pmm3INDELD1_5map_l100_m0_e0homalt
99.6124
99.6124
99.6124
80.3503
257125711
100.0000
hfeng-pmm2INDELD1_5map_l100_m0_e0homalt
99.4197
99.6124
99.2278
81.9638
257125722
100.0000
cchapple-customINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
99.4136
99.6124
99.2157
53.4672
257125322
100.0000
ltrigg-rtg1INDELD1_5map_l100_m0_e0homalt
99.6116
99.6124
99.6109
81.3091
257125611
100.0000
astatham-gatkINDELD1_5map_l100_m0_e0homalt
99.2278
99.6124
98.8462
83.9208
257125732
66.6667
bgallagher-sentieonINDELD1_5map_l100_m0_e0homalt
99.4197
99.6124
99.2278
83.8529
257125722
100.0000
mlin-fermikitINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhomalt
97.1544
99.6124
94.8148
60.2941
25712561413
92.8571
rpoplin-dv42INDELD1_5map_l100_m0_e0homalt
99.0366
99.6124
98.4674
83.9975
257125744
100.0000
raldana-dualsentieonSNPtimap_l125_m2_e0homalt
99.7663
99.6126
99.9205
64.9616
11314441131498
88.8889
eyeh-varpipeSNP*map_l125_m1_e0het
98.1718
99.6126
96.7721
75.4925
282821102740291428
3.0635
ltrigg-rtg1SNPtimap_l125_m2_e0homalt
99.7531
99.6126
99.8940
67.9785
1131444113141212
100.0000
egarrison-hhgaSNPtvmap_l150_m2_e1homalt
99.7698
99.6130
99.9272
73.5901
411816411833
100.0000
ndellapenna-hhgaSNPtvmap_l100_m1_e0homalt
99.7619
99.6130
99.9113
61.1747
900835900886
75.0000
ndellapenna-hhgaSNPtvmap_l100_m2_e1homalt
99.7631
99.6130
99.9137
63.7862
926636926686
75.0000
eyeh-varpipeSNP*map_l125_m0_e0*
98.1324
99.6131
96.6952
78.1519
19310751878464222
3.4268
ltrigg-rtg2SNPtvsegdup*
98.9872
99.6132
98.3690
88.4663
849933850414121
14.8936
eyeh-varpipeSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_merged*
98.1234
99.6134
96.6774
60.9972
275711072612989885
9.4655
jmaeng-gatkINDELI1_5map_l100_m1_e0homalt
99.3263
99.6139
99.0403
80.7962
516251654
80.0000
rpoplin-dv42INDELI1_5map_l100_m1_e0homalt
99.4220
99.6139
99.2308
80.6620
516251642
50.0000
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.6260
99.6141
99.6379
82.9126
4130164128158
53.3333
ckim-vqsrINDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10het
99.7762
99.6141
99.9389
56.2917
14713571471591
11.1111
eyeh-varpipeSNPtimap_l150_m1_e0*
99.1809
99.6144
98.7511
77.4196
19636761929324416
6.5574
asubramanian-gatkSNP*func_cdshet
99.5968
99.6147
99.5789
34.4684
111184311115471
2.1277
hfeng-pmm3SNPtvmap_sirenhet
99.6834
99.6155
99.7514
57.1444
2849911028494717
9.8592
raldana-dualsentieonSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.7436
99.6160
99.8716
27.5888
389115389051
20.0000
raldana-dualsentieonSNPtimap_l125_m2_e1homalt
99.7684
99.6160
99.9212
64.9891
11414441141498
88.8889
ltrigg-rtg1SNPtimap_l125_m2_e1homalt
99.7553
99.6160
99.8950
68.0185
1141444114151212
100.0000