PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1473 1474 1475 1476 1477 1478 1479 1480 1481 ... 1720 1721 » 73801-73850 / 86044 show all
ckim-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.3332	99.5580	99.1095	50.6288	10361	46	10350	93	84	90.3226
hfeng-pmm2	SNP	*	map_l100_m1_e0	*	99.5195	99.5580	99.4810	66.0017	72083	320	72072	376	47	12.5000
jli-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.6822	99.5584	99.8063	74.0988	3607	16	3607	7	3	42.8571
dgrover-gatk	INDEL	*	HG002complexvar	het	99.6862	99.5586	99.8141	57.9282	46008	204	45634	85	51	60.0000
cchapple-custom	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.1247	99.5589	96.7314	45.9773	9479	42	9470	320	309	96.5625
ghariani-varprowl	SNP	ti	segdup	het	97.4023	99.5594	95.3366	92.6943	11977	53	11980	586	2	0.3413
jlack-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6329	99.5598	99.7061	77.3995	1357	6	1357	4	2	50.0000
hfeng-pmm1	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6695	99.5598	99.7794	76.6162	1357	6	1357	3	0	0.0000
ndellapenna-hhga	SNP	ti	map_l125_m2_e0	homalt	99.7486	99.5598	99.9381	67.6520	11308	50	11308	7	7	100.0000
cchapple-custom	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7236	99.5599	99.8877	53.8466	14705	65	15125	17	10	58.8235
jlack-gatk	INDEL	D6_15	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	98.1705	99.5602	96.8190	57.4112	3622	16	3622	119	117	98.3193
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.6169	99.5602	99.6736	72.0020	45501	201	45497	149	51	34.2282
rpoplin-dv42	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.6169	99.5602	99.6736	72.0020	45501	201	45497	149	51	34.2282
ghariani-varprowl	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	*	97.2784	99.5607	95.0984	65.7462	2946	13	2949	152	10	6.5790
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.4073	99.5608	99.2542	75.3973	14507	64	14507	109	12	11.0092
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.4073	99.5608	99.2542	75.3973	14507	64	14507	109	12	11.0092
ltrigg-rtg2	SNP	*	map_l100_m0_e0	homalt	99.7457	99.5611	99.9309	58.9350	11569	51	11567	8	6	75.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0815	99.5612	98.6064	70.5927	28586	126	28586	404	25	6.1881
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0815	99.5612	98.6064	70.5927	28586	126	28586	404	25	6.1881
ltrigg-rtg1	INDEL	D1_5	map_l150_m1_e0	homalt	99.3435	99.5614	99.1266	85.6156	227	1	227	2	2	100.0000
rpoplin-dv42	INDEL	D1_5	map_l150_m1_e0	homalt	98.9107	99.5614	98.2684	87.7971	227	1	227	4	4	100.0000
ckim-dragen	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	97.6869	99.5614	95.8817	72.8731	908	4	908	39	38	97.4359
jli-custom	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4524	99.5614	99.3435	66.3352	908	4	908	6	4	66.6667
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7288	99.5616	99.8965	59.3927	3861	17	3861	4	0	0.0000
jli-custom	INDEL	D1_5	HG002complexvar	het	99.7322	99.5618	99.9033	54.7904	20674	91	20667	20	6	30.0000
eyeh-varpipe	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	97.4056	99.5621	95.3406	49.3281	10685	47	10497	513	52	10.1365
ltrigg-rtg2	SNP	*	map_l125_m1_e0	homalt	99.7511	99.5623	99.9406	63.1402	16831	74	16832	10	9	90.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.1418	99.5624	98.7248	70.1554	910	4	929	12	1	8.3333
asubramanian-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.4536	99.5624	99.3450	70.1434	910	4	910	6	0	0.0000
astatham-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6989	99.5626	99.8355	53.1956	3642	16	3641	6	1	16.6667
ndellapenna-hhga	SNP	*	map_l125_m2_e0	homalt	99.7405	99.5626	99.9191	67.9668	17299	76	17299	14	13	92.8571
jmaeng-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	het	99.6443	99.5626	99.7262	54.5715	3642	16	3642	10	5	50.0000
jmaeng-gatk	INDEL	*	HG002compoundhet	homalt	60.0968	99.5627	43.0372	84.8886	683	3	683	904	898	99.3363
jlack-gatk	INDEL	*	HG002compoundhet	homalt	47.4306	99.5627	31.1304	79.5488	683	3	683	1511	1501	99.3382
jli-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.4273	99.5631	99.2919	54.6106	1823	8	1823	13	0	0.0000
hfeng-pmm2	SNP	*	map_l100_m2_e0	*	99.5209	99.5633	99.4785	67.6209	73641	323	73630	386	47	12.1762
raldana-dualsentieon	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7085	99.5633	99.8541	71.1368	1368	6	1369	2	0	0.0000
ckim-dragen	INDEL	I1_5	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5267	99.5633	99.4902	73.5096	1368	6	1366	7	0	0.0000
asubramanian-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2985	99.5634	99.0351	56.4261	6157	27	6158	60	1	1.6667
bgallagher-sentieon	SNP	*	map_l100_m1_e0	*	99.4317	99.5636	99.3001	65.4224	72087	316	72076	508	81	15.9449
ndellapenna-hhga	SNP	ti	map_l125_m2_e1	homalt	99.7508	99.5636	99.9387	67.6903	11408	50	11408	7	7	100.0000
gduggal-snapfb	SNP	*	HG002complexvar	het	98.8655	99.5639	98.1768	21.9725	463470	2030	464235	8621	899	10.4280
hfeng-pmm2	SNP	ti	map_l250_m1_e0	homalt	99.5025	99.5644	99.4406	86.8749	1600	7	1600	9	2	22.2222
hfeng-pmm3	SNP	ti	map_l250_m1_e0	homalt	99.5025	99.5644	99.4406	86.8266	1600	7	1600	9	2	22.2222
raldana-dualsentieon	SNP	tv	map_l150_m2_e1	homalt	99.7335	99.5646	99.9029	70.1838	4116	18	4116	4	2	50.0000
gduggal-bwafb	SNP	ti	lowcmp_SimpleRepeat_triTR_11to50	*	99.3744	99.5648	99.1847	37.2000	3889	17	3893	32	7	21.8750
gduggal-bwafb	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7199	99.5649	99.8753	57.4423	1602	7	1602	2	0	0.0000
eyeh-varpipe	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4574	99.5649	99.3502	34.3868	2746	12	2599	17	7	41.1765
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.7820	99.5649	100.0000	36.1989	2746	12	2746	0	0
ltrigg-rtg2	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.7820	99.5649	100.0000	50.4551	1602	7	1633	0	0

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge