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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1471 1472 1473 1474 1475 1476 1477 1478 1479 ... 1720 1721 » 73701-73750 / 86044 show all
jli-custom	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6106	99.5460	99.6753	76.5566	1535	7	1535	5	3	60.0000
ltrigg-rtg2	SNP	ti	map_l125_m2_e1	homalt	99.7464	99.5462	99.9474	65.8140	11406	52	11407	6	6	100.0000
jli-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4405	99.5463	99.3348	79.5031	10752	49	10752	72	13	18.0556
rpoplin-dv42	INDEL	I1_5	HG002complexvar	homalt	99.7169	99.5464	99.8881	51.4705	13387	61	13384	15	14	93.3333
bgallagher-sentieon	SNP	ti	map_l100_m2_e0	*	99.4612	99.5466	99.3760	66.3096	48739	222	48732	306	50	16.3399
ckim-gatk	INDEL	D1_5	segdup	*	98.1263	99.5467	96.7458	96.0214	1098	5	1100	37	2	5.4054
dgrover-gatk	INDEL	D1_5	segdup	*	99.5471	99.5467	99.5475	94.9619	1098	5	1100	5	2	40.0000
raldana-dualsentieon	INDEL	D1_5	segdup	*	99.6373	99.5467	99.7280	94.0940	1098	5	1100	3	2	66.6667
jli-custom	INDEL	D1_5	segdup	*	99.5918	99.5467	99.6370	94.3313	1098	5	1098	4	1	25.0000
hfeng-pmm1	SNP	tv	HG002complexvar	het	99.7636	99.5469	99.9813	20.8221	150048	683	149969	28	9	32.1429
ciseli-custom	SNP	ti	segdup	homalt	98.5690	99.5470	97.6100	88.0096	7471	34	7433	182	99	54.3956
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	99.1964	99.5470	98.8483	74.0177	14505	66	14505	169	12	7.1006
jli-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	99.1964	99.5470	98.8483	74.0177	14505	66	14505	169	12	7.1006
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5020	99.5471	99.4570	86.4067	1099	5	1099	6	5	83.3333
dgrover-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.5922	99.5471	99.6374	86.6820	1099	5	1099	4	4	100.0000
dgrover-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7731	99.5473	100.0000	61.3407	1759	8	1759	0	0
jli-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7731	99.5473	100.0000	61.6441	1759	8	1759	0	0
ckim-gatk	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7448	99.5473	99.9432	60.9323	1759	8	1759	1	1	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7448	99.5473	99.9432	61.1393	1759	8	1759	1	1	100.0000
ndellapenna-hhga	SNP	ti	map_l125_m1_e0	homalt	99.7415	99.5473	99.9364	64.8588	10995	50	10995	7	7	100.0000
rpoplin-dv42	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7731	99.5473	100.0000	61.8604	1759	8	1759	0	0
bgallagher-sentieon	INDEL	*	HG002complexvar	het	99.6698	99.5477	99.7922	57.6447	46003	209	45633	95	61	64.2105
bgallagher-sentieon	INDEL	*	map_siren	homalt	99.3618	99.5480	99.1763	81.3504	2643	12	2649	22	13	59.0909
astatham-gatk	INDEL	*	map_siren	homalt	99.4364	99.5480	99.3251	81.5279	2643	12	2649	18	12	66.6667
raldana-dualsentieon	SNP	tv	map_l150_m0_e0	homalt	99.6608	99.5482	99.7736	73.0800	1322	6	1322	3	1	33.3333
ltrigg-rtg2	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3249	99.5483	99.1025	56.2469	35259	160	35334	320	23	7.1875
ltrigg-rtg1	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4242	99.5483	99.3004	56.7770	35259	160	35343	249	16	6.4257
jpowers-varprowl	SNP	ti	*	*	99.5767	99.5483	99.6052	21.1558	2076086	9421	2076295	8230	1307	15.8809
ltrigg-rtg1	SNP	ti	map_l250_m2_e1	homalt	99.6047	99.5485	99.6610	87.3743	1764	8	1764	6	6	100.0000
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7738	99.5485	100.0000	26.8007	441	2	437	0	0
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7738	99.5485	100.0000	27.1667	441	2	437	0	0
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.5851	99.5485	99.6217	39.7050	3969	18	3950	15	6	40.0000
qzeng-custom	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	99.2214	99.5485	98.8965	52.5869	11245	51	19268	215	45	20.9302
hfeng-pmm1	SNP	ti	map_l250_m2_e1	homalt	99.5205	99.5485	99.4924	87.8161	1764	8	1764	9	2	22.2222
jlack-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2126	99.5485	98.8789	32.5265	441	2	441	5	4	80.0000
eyeh-varpipe	SNP	tv	map_l250_m2_e0	*	98.7380	99.5489	97.9403	90.6578	2869	13	2853	60	6	10.0000
jli-custom	SNP	tv	map_siren	*	99.6133	99.5493	99.6773	55.0835	45723	207	45718	148	36	24.3243
hfeng-pmm2	SNP	ti	map_l100_m2_e1	*	99.5423	99.5494	99.5352	66.9275	49262	223	49255	230	30	13.0435
bgallagher-sentieon	SNP	ti	map_l100_m2_e1	*	99.4649	99.5494	99.3806	66.3075	49262	223	49255	307	50	16.2866
ltrigg-rtg1	SNP	ti	map_l150_m1_e0	homalt	99.6993	99.5496	99.8494	70.3647	7294	33	7295	11	11	100.0000
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7040	99.5496	99.8589	54.8699	16355	74	16278	23	8	34.7826
hfeng-pmm2	SNP	tv	map_l125_m0_e0	homalt	99.5050	99.5498	99.4602	72.5691	2211	10	2211	12	4	33.3333
hfeng-pmm1	SNP	tv	map_l125_m0_e0	homalt	99.5050	99.5498	99.4602	72.4501	2211	10	2211	12	4	33.3333
eyeh-varpipe	SNP	*	map_l125_m0_e0	het	97.2776	99.5499	95.1068	80.0626	12607	57	12245	630	17	2.6984
ndellapenna-hhga	SNP	*	map_l125_m1_e0	homalt	99.7333	99.5504	99.9169	65.2026	16829	76	16829	14	13	92.8571
dgrover-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4181	99.5505	99.2861	75.9770	48054	217	47844	344	262	76.1628
egarrison-hhga	INDEL	*	func_cds	*	99.4388	99.5506	99.3274	89.6520	443	2	443	3	0	0.0000
jmaeng-gatk	INDEL	*	func_cds	*	97.9088	99.5506	96.3203	53.9841	443	2	445	17	0	0.0000
ckim-dragen	INDEL	*	func_cds	*	98.4444	99.5506	97.3626	49.5006	443	2	443	12	1	8.3333
ghariani-varprowl	SNP	tv	HG002complexvar	*	98.9457	99.5507	98.3479	26.3760	245046	1106	245266	4120	790	19.1748

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