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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73601-73650 / 86044 show all
mlin-fermikitSNPtilowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
97.5636
99.5347
95.6691
57.4517
100554710073456383
83.9912
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.7194
99.5347
99.9047
51.7499
25241118251642415
62.5000
raldana-dualsentieonSNP*map_l100_m0_e0homalt
99.7198
99.5353
99.9050
58.6521
115665411566118
72.7273
ndellapenna-hhgaSNP*HG002complexvarhet
99.7473
99.5353
99.9601
18.3091
463334216346335318579
42.7027
astatham-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0900
99.5359
98.6480
56.8443
66483166409188
96.7033
astatham-gatkSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
astatham-gatkSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4932
858485800
bgallagher-sentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
bgallagher-sentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.4231
858485800
raldana-dualsentieonSNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
22.0708
858485800
raldana-dualsentieonSNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
22.0708
858485800
ltrigg-rtg2SNP*HG002compoundhethetalt
99.7674
99.5360
100.0000
21.7668
858485900
ltrigg-rtg2SNPtvHG002compoundhethetalt
99.7674
99.5360
100.0000
21.7668
858485900
eyeh-varpipeSNPtvmap_l250_m2_e0het
98.3041
99.5361
97.1022
91.0806
193191910574
7.0175
cchapple-customSNPtvlowcmp_SimpleRepeat_triTR_11to50*
99.5073
99.5362
99.4784
36.9220
3434163433185
27.7778
gduggal-snapfbSNPtvHG002complexvarhet
98.4837
99.5363
97.4531
25.4817
1500356991503383929342
8.7045
ckim-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
astatham-gatkINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
63.5095
859486032
66.6667
ckim-vqsrINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
64.2502
859486032
66.6667
jli-customINDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5944
99.5365
99.6524
61.5590
859486032
66.6667
gduggal-bwafbSNPtvsegduphomalt
99.6445
99.5368
99.7524
90.8111
322315322388
100.0000
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
99.6908
99.5369
99.8452
60.6918
386918386966
100.0000
ckim-dragenSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.7101
99.5369
99.8839
62.7379
343916344244
100.0000
ltrigg-rtg2SNPtimap_l100_m0_e0homalt
99.7358
99.5369
99.9354
58.2970
773836773855
100.0000
qzeng-customSNP*lowcmp_SimpleRepeat_diTR_11to50homalt
99.3772
99.5369
99.2181
66.4594
34391634262714
51.8519
ckim-dragenINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
98.3982
99.5370
97.2851
67.4041
215121566
100.0000
cchapple-customINDELI6_15lowcmp_SimpleRepeat_quadTR_11to50homalt
98.8506
99.5370
98.1735
65.0160
215121544
100.0000
hfeng-pmm2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7347
99.5374
99.9328
57.9303
163537616352114
36.3636
hfeng-pmm1SNPtimap_siren*
99.7016
99.5376
99.8660
52.2018
998914649987813442
31.3433
ckim-dragenINDELD6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6240
99.5376
99.7106
36.1655
17228172355
100.0000
astatham-gatkSNP*map_sirenhomalt
99.7411
99.5377
99.9454
50.1425
54901255548923026
86.6667
jlack-gatkINDELD1_5HG002complexvarhet
99.5570
99.5377
99.5763
55.9428
2066996206818829
32.9545
ltrigg-rtg2INDELD1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7686
99.5382
100.0000
50.6863
10131471009500
jli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.2437
99.5383
98.9508
69.9567
150971509162
12.5000
ltrigg-rtg2SNP*map_l150_m2_e0homalt
99.7345
99.5384
99.9314
70.4233
11645541164787
87.5000
jlack-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50het
99.3167
99.5384
99.0960
53.8093
66853166876111
18.0328
hfeng-pmm2SNPtvHG002complexvarhet
99.7540
99.5389
99.9700
20.7785
150036695149957458
17.7778
ltrigg-rtg1SNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
99.4459
99.5389
99.3531
60.6036
1748781175081149
7.8947
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50*
99.6923
99.5392
99.8459
28.7987
388818388861
16.6667
hfeng-pmm3INDELD6_15lowcmp_SimpleRepeat_diTR_11to50homalt
99.2343
99.5392
98.9313
39.6684
1944919442120
95.2381
ltrigg-rtg2SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
98.8441
99.5400
98.1579
64.3471
2164102238422
4.7619
jmaeng-gatkSNP*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.7449
99.5401
99.9505
54.6217
606028606033
100.0000
qzeng-customSNP*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6848
99.5401
99.8300
56.5387
170987917030299
31.0345
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
rpoplin-dv42SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
99.5504
99.5402
99.5606
75.8969
1450467145026417
26.5625
hfeng-pmm1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
99.7696
99.5402
100.0000
80.2993
389718389700
ltrigg-rtg1SNPtilowcmp_SimpleRepeat_quadTR_11to50het
99.0969
99.5403
98.6573
40.9208
6713316760921
1.0870
jmaeng-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.6339
99.5404
97.7437
66.8858
1083510832519
76.0000
rpoplin-dv42SNPtimap_l100_m2_e1homalt
99.6670
99.5404
99.7940
62.9692
1840985184103836
94.7368
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
98.9493
99.5404
98.3651
65.9133
1083510831816
88.8889