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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
73051-73100 / 86044 show all
ltrigg-rtg1SNPtvmap_l150_m0_e0homalt
99.6981
99.4729
99.9244
76.2016
13217132111
100.0000
eyeh-varpipeSNPtvmap_l150_m0_e0homalt
99.5466
99.4729
99.6203
81.0066
13217131251
20.0000
dgrover-gatkSNPtimap_l100_m2_e0*
99.5249
99.4730
99.5767
67.5957
487032584869620750
24.1546
hfeng-pmm3INDELD1_5map_sirenhet
99.3647
99.4730
99.2567
77.5211
2265122270172
11.7647
jlack-gatkINDELD1_5map_sirenhet
95.7195
99.4730
92.2389
84.5589
226512227019111
5.7592
hfeng-pmm1INDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6608
99.4733
99.8491
69.3074
264414264642
50.0000
dgrover-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6608
99.4733
99.8491
69.8452
264414264643
75.0000
raldana-dualsentieonSNPtvmap_l100_m1_e0*
99.3984
99.4735
99.3234
65.0677
24372129243681665
3.0121
qzeng-customINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.4721
99.4737
99.4705
36.2584
13237131577
100.0000
ndellapenna-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.1754
99.4737
98.8789
38.7923
1323713231513
86.6667
eyeh-varpipeINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
94.2215
99.4737
89.4961
39.1577
132371474173173
100.0000
ciseli-customSNPtvfunc_cds*
95.2555
99.4738
91.3804
30.2616
434823433640911
2.6895
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
99.1542
99.4744
98.8359
77.1224
908548908510710
9.3458
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
99.1542
99.4744
98.8359
77.1224
908548908510710
9.3458
hfeng-pmm2SNPtimap_l125_m2_e0*
99.4203
99.4745
99.3661
73.2412
300991593009519223
11.9792
jli-customINDELD1_5**
99.6468
99.4746
99.8195
58.9401
145974771146018264201
76.1364
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.5256
99.4746
97.5945
65.3571
56835681414
100.0000
raldana-dualsentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.1850
99.4746
96.9283
66.0880
56835681818
100.0000
dgrover-gatkINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
98.6111
99.4746
97.7625
67.1751
56835681313
100.0000
bgallagher-sentieonINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
97.8467
99.4746
96.2712
66.6478
56835682222
100.0000
astatham-gatkINDELD1_5HG002complexvarhet
99.6863
99.4751
99.8985
56.1634
20656109206622112
57.1429
ndellapenna-hhgaSNPtvlowcmp_AllRepeats_lt51bp_gt95identity_mergedhomalt
99.5343
99.4751
99.5935
60.5291
1004453100454139
95.1220
ckim-dragenSNPtvmap_siren*
98.9465
99.4753
98.4233
61.5086
456892414569473269
9.4262
hfeng-pmm2SNPtilowcmp_SimpleRepeat_triTR_11to50het
99.6765
99.4754
99.8784
28.4513
246513246430
0.0000
dgrover-gatkSNP*map_l100_m2_e1het
99.3747
99.4755
99.2742
71.6392
466522464664134163
18.4751
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.7048
99.4757
99.9349
66.5658
1688689168861111
100.0000
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.7048
99.4757
99.9349
66.5658
1688689168861111
100.0000
bgallagher-sentieonSNPtimap_l100_m1_e0het
99.2799
99.4757
99.0849
68.0556
297851572977827538
13.8182
astatham-gatkINDEL*map_l125_m2_e0homalt
99.2806
99.4758
99.0862
86.9395
759475974
57.1429
bgallagher-sentieonINDEL*map_l125_m2_e0homalt
99.1509
99.4758
98.8281
86.7266
759475994
44.4444
hfeng-pmm2INDEL*map_l125_m2_e0homalt
99.2157
99.4758
98.9570
85.4238
759475984
50.0000
hfeng-pmm3INDEL*map_l125_m2_e0homalt
99.2806
99.4758
99.0862
84.5627
759475973
42.8571
gduggal-bwafbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.0762
99.4760
94.7894
67.5394
132971328734
5.4795
ckim-vqsrINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.0969
99.4760
98.7206
57.2310
66443566368683
96.5116
ltrigg-rtg1SNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
97.9971
99.4760
96.5614
59.6546
132971376491
2.0408
ltrigg-rtg2INDEL*lowcmp_SimpleRepeat_homopolymer_6to10*
99.6790
99.4763
99.8825
56.1108
28112148280643318
54.5455
dgrover-gatkSNPtimap_l100_m1_e0*
99.5344
99.4763
99.5926
66.0277
476802514767319549
25.1282
jli-customINDELI1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.6329
99.4764
99.7899
79.2908
950595021
50.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.7126
99.4764
99.9499
47.9937
399021399020
0.0000
raldana-dualsentieonINDEL*lowcmp_SimpleRepeat_homopolymer_6to10het
99.7041
99.4765
99.9327
57.5361
163438616341114
36.3636
rpoplin-dv42SNPtilowcmp_AllRepeats_51to200bp_gt95identity_merged*
99.5532
99.4766
99.6299
68.0748
3231173230125
41.6667
dgrover-gatkSNPtimap_l100_m2_e1*
99.5279
99.4766
99.5792
67.5880
492262594921920850
24.0385
rpoplin-dv42SNP*map_l100_m2_e0homalt
99.6325
99.4768
99.7886
63.6376
27379144273805854
93.1034
jli-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2319
99.4770
98.9880
80.7127
68473668477012
17.1429
jpowers-varprowlSNPtv**
99.3067
99.4773
99.1367
27.6192
964620506996486284021363
16.2223
bgallagher-sentieonSNPtimap_l100_m2_e0het
99.2634
99.4775
99.0503
69.3746
304621603045529238
13.0137
hfeng-pmm3SNPtvmap_l125_m2_e1*
99.5225
99.4777
99.5673
71.4702
1657087165687210
13.8889
gduggal-bwafbINDEL*lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.5570
99.4777
99.6364
55.6678
1123759112344140
97.5610
jmaeng-gatkSNP*HG002complexvarhet
99.7155
99.4778
99.9544
19.1665
463066243146293821165
30.8057
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhomalt
99.7382
99.4778
100.0000
83.4564
381238100