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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1457 1458 1459 1460 1461 1462 1463 1464 1465 ... 1720 1721 » 73001-73050 / 86044 show all
egarrison-hhga	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.5292	99.4658	99.5927	55.2671	3910	21	3912	16	4	25.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6989	99.4660	99.9329	79.6894	1490	8	1490	1	1	100.0000
hfeng-pmm1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.7323	99.4660	100.0000	82.1364	1490	8	1490	0	0
hfeng-pmm1	SNP	tv	map_l100_m2_e1	*	99.6118	99.4660	99.7580	65.8552	25148	135	25144	61	17	27.8689
astatham-gatk	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7323	99.4661	100.0000	34.5710	1304	7	1304	0	0
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.7323	99.4661	100.0000	30.4021	1304	7	1298	0	0
ltrigg-rtg1	SNP	tv	map_l250_m2_e0	homalt	99.6791	99.4664	99.8928	87.0650	932	5	932	1	1	100.0000
dgrover-gatk	SNP	*	map_l100_m1_e0	het	99.3755	99.4665	99.2846	70.4056	45117	242	45106	325	62	19.0769
rpoplin-dv42	SNP	*	map_l100_m1_e0	homalt	99.6291	99.4667	99.7919	61.1512	26859	144	26860	56	52	92.8571
ckim-dragen	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6736	99.4668	99.8812	64.0938	1679	9	1682	2	2	100.0000
jlack-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7031	99.4668	99.9405	63.6364	1679	9	1679	1	1	100.0000
astatham-gatk	SNP	ti	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.7327	99.4668	100.0000	64.1699	1679	9	1679	0	0
egarrison-hhga	SNP	ti	map_siren	*	99.6715	99.4669	99.8769	52.8764	99820	535	99821	123	54	43.9024
ndellapenna-hhga	SNP	ti	map_l150_m2_e1	homalt	99.6938	99.4670	99.9217	72.2586	7652	41	7652	6	6	100.0000
hfeng-pmm3	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.7328	99.4670	100.0000	48.0069	2426	13	2426	0	0
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.0051	99.4671	98.5473	71.4531	28559	153	28559	421	23	5.4632
bgallagher-sentieon	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.0051	99.4671	98.5473	71.4531	28559	153	28559	421	23	5.4632
eyeh-varpipe	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4785	99.4671	99.4898	52.4587	2240	12	2145	11	2	18.1818
ltrigg-rtg2	SNP	ti	map_l150_m1_e0	homalt	99.6922	99.4677	99.9178	67.8010	7288	39	7289	6	6	100.0000
jli-custom	SNP	tv	map_l150_m2_e1	homalt	99.6848	99.4678	99.9028	70.2106	4112	22	4112	4	4	100.0000
ckim-vqsr	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5068	99.4678	99.5459	59.1769	17756	95	17755	81	6	7.4074
bgallagher-sentieon	SNP	tv	map_l150_m2_e1	homalt	99.6486	99.4678	99.8301	71.0988	4112	22	4112	7	5	71.4286
asubramanian-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_diTR_11to50	homalt	96.3802	99.4681	93.4783	60.2735	561	3	1032	72	70	97.2222
jli-custom	SNP	*	map_siren	het	99.5222	99.4681	99.5764	53.8949	90507	484	90501	385	76	19.7403
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.4164	99.4681	99.3648	53.1463	1122	6	1095	7	2	28.5714
ckim-dragen	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	93.7343	99.4681	88.6256	69.5087	187	1	187	24	24	100.0000
ckim-dragen	INDEL	D16_PLUS	*	homalt	97.0588	99.4681	94.7635	72.2066	1683	9	1683	93	84	90.3226
hfeng-pmm3	SNP	tv	map_l100_m1_e0	het	99.5262	99.4681	99.5843	65.6944	15335	82	15331	64	5	7.8125
hfeng-pmm2	INDEL	I6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	96.1440	99.4681	93.0348	67.3701	187	1	187	14	13	92.8571
eyeh-varpipe	SNP	tv	HG002compoundhet	homalt	96.9051	99.4687	94.4704	53.4614	3370	18	1213	71	32	45.0704
ciseli-custom	SNP	*	segdup	homalt	98.3606	99.4694	97.2762	88.7149	10686	57	10607	297	168	56.5657
dgrover-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	*	99.4814	99.4694	99.4934	82.7155	4124	22	4124	21	7	33.3333
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6415	99.4695	99.8142	51.5034	11812	63	11817	22	15	68.1818
dgrover-gatk	SNP	*	map_l100_m2_e0	het	99.3701	99.4698	99.2707	71.6313	46153	246	46142	339	63	18.5841
hfeng-pmm2	SNP	*	map_l125_m2_e1	*	99.3819	99.4704	99.2936	73.5231	46952	250	46946	334	39	11.6766
hfeng-pmm1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.7102	99.4704	99.9511	57.5377	16342	87	16340	8	1	12.5000
ckim-gatk	SNP	tv	segdup	het	98.3440	99.4704	97.2428	95.8012	5259	28	5255	149	0	0.0000
ltrigg-rtg1	SNP	tv	map_l250_m2_e1	homalt	99.6822	99.4715	99.8938	87.1662	941	5	941	1	1	100.0000
dgrover-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2755	99.4715	99.0802	50.4204	10352	55	10341	96	89	92.7083
rpoplin-dv42	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	98.3381	99.4715	97.2303	50.5019	10352	55	10356	295	278	94.2373
ckim-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4059	99.4716	99.3404	88.6280	1506	8	1506	10	9	90.0000
astatham-gatk	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3786	99.4717	99.2856	75.6401	48016	255	47805	344	267	77.6163
asubramanian-gatk	SNP	tv	func_cds	homalt	99.7352	99.4718	100.0000	25.3304	1695	9	1695	0	0
ckim-vqsr	SNP	tv	func_cds	homalt	99.7352	99.4718	100.0000	25.8206	1695	9	1695	0	0
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
cchapple-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.7222	99.4720	99.9738	61.6817	11491	61	11440	3	1	33.3333
ltrigg-rtg1	SNP	*	map_l250_m1_e0	homalt	99.6340	99.4722	99.7963	86.3079	2450	13	2450	5	5	100.0000
hfeng-pmm3	SNP	tv	map_l125_m2_e0	*	99.5176	99.4724	99.5629	71.4177	16402	87	16400	72	10	13.8889
hfeng-pmm3	INDEL	*	map_siren	homalt	99.4733	99.4727	99.4739	78.7290	2641	14	2647	14	9	64.2857
hfeng-pmm1	INDEL	*	map_siren	homalt	99.4357	99.4727	99.3987	79.2482	2641	14	2645	16	9	56.2500

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