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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1453 1454 1455 1456 1457 1458 1459 1460 1461 ... 1720 1721 » 72801-72850 / 86044 show all
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6927	99.4381	99.9487	76.0337	3893	22	3893	2	2	100.0000
dgrover-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7183	99.4382	100.0000	81.2500	177	1	177	0	0
astatham-gatk	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7183	99.4382	100.0000	81.2500	177	1	177	0	0
bgallagher-sentieon	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7183	99.4382	100.0000	81.1902	177	1	177	0	0
cchapple-custom	INDEL	I16_PLUS	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.7183	99.4382	100.0000	80.1743	177	1	182	0	0
egarrison-hhga	SNP	*	map_siren	*	99.6583	99.4385	99.8791	53.8224	145407	821	145408	176	78	44.3182
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	het	99.6384	99.4387	99.8390	60.5902	2480	14	2480	4	0	0.0000
ckim-vqsr	INDEL	I1_5	HG002complexvar	het	99.6583	99.4392	99.8784	58.1585	18087	102	18064	22	13	59.0909
hfeng-pmm3	SNP	ti	map_l150_m2_e0	*	99.5024	99.4394	99.5655	75.5202	20397	115	20393	89	14	15.7303
hfeng-pmm3	SNP	*	map_l100_m1_e0	het	99.5486	99.4400	99.6575	64.8095	45105	254	45094	155	14	9.0323
ltrigg-rtg2	SNP	ti	map_l250_m1_e0	homalt	99.6259	99.4400	99.8126	84.3683	1598	9	1598	3	3	100.0000
ciseli-custom	SNP	tv	*	homalt	98.4608	99.4400	97.5007	22.4395	375011	2112	373610	9577	3591	37.4961
hfeng-pmm3	SNP	ti	map_l150_m2_e1	*	99.5026	99.4402	99.5651	75.5918	20607	116	20603	90	14	15.5556
ndellapenna-hhga	SNP	ti	map_l150_m1_e0	homalt	99.6785	99.4404	99.9177	69.6369	7286	41	7286	6	6	100.0000
ndellapenna-hhga	SNP	*	map_l100_m0_e0	homalt	99.6765	99.4406	99.9135	60.1441	11555	65	11555	10	8	80.0000
qzeng-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5632	99.4406	99.6861	52.5328	1600	9	1588	5	3	60.0000
qzeng-custom	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.6338	99.4406	99.8276	58.0012	11022	62	11004	19	1	5.2632
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.6885	99.4406	99.9375	43.4875	1600	9	1600	1	1	100.0000
jli-custom	SNP	tv	map_siren	het	99.4790	99.4407	99.5172	56.5108	28449	160	28447	138	26	18.8406
qzeng-custom	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.1042	99.4409	98.7698	49.5614	10672	60	10678	133	13	9.7744
eyeh-varpipe	SNP	ti	map_l250_m2_e0	*	99.0376	99.4409	98.6375	90.5192	4980	28	4923	68	6	8.8235
bgallagher-sentieon	SNP	tv	map_l125_m2_e1	het	98.8786	99.4409	98.3226	76.2835	10494	59	10492	179	22	12.2905
ltrigg-rtg2	SNP	*	map_l250_m2_e0	homalt	99.6642	99.4415	99.8878	85.5934	2671	15	2671	3	3	100.0000
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.8517	99.4416	98.2688	76.2612	9082	51	9082	160	11	6.8750
bgallagher-sentieon	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.8517	99.4416	98.2688	76.2612	9082	51	9082	160	11	6.8750
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.4197	99.4416	99.3979	75.9193	9082	51	9080	55	15	27.2727
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.4197	99.4416	99.3979	75.9193	9082	51	9080	55	15	27.2727
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.1864	99.4416	98.9325	66.4187	3740	21	3707	40	40	100.0000
cchapple-custom	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.1864	99.4416	98.9325	66.4187	3740	21	3707	40	40	100.0000
dgrover-gatk	SNP	ti	map_l100_m2_e0	het	99.4042	99.4416	99.3668	70.9135	30451	171	30444	194	39	20.1031
bgallagher-sentieon	SNP	*	map_l125_m1_e0	*	99.2644	99.4418	99.0876	71.3529	45074	253	45068	415	70	16.8675
dgrover-gatk	SNP	ti	map_l100_m1_e0	het	99.4173	99.4423	99.3923	69.6868	29775	167	29768	182	38	20.8791
bgallagher-sentieon	INDEL	I1_5	segdup	het	99.1669	99.4424	98.8930	95.2746	535	3	536	6	0	0.0000
bgallagher-sentieon	SNP	tv	map_l150_m1_e0	homalt	99.6318	99.4425	99.8219	68.7396	3924	22	3924	7	5	71.4286
jli-custom	SNP	tv	map_l150_m1_e0	homalt	99.6698	99.4425	99.8982	67.6388	3924	22	3924	4	4	100.0000
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	99.2336	99.4427	99.0254	72.4471	28552	160	28552	281	26	9.2527
dgrover-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	99.2336	99.4427	99.0254	72.4471	28552	160	28552	281	26	9.2527
ckim-vqsr	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.2848	99.4427	99.1274	50.6623	10349	58	10338	91	83	91.2088
dgrover-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.5152	99.4428	99.5877	78.3498	6068	34	6039	25	11	44.0000
bgallagher-sentieon	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4743	99.4428	99.5058	77.9305	6068	34	6040	30	14	46.6667
ckim-gatk	INDEL	I1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.4251	99.4428	99.4073	78.7466	6068	34	6038	36	13	36.1111
rpoplin-dv42	INDEL	D1_5	segdup	homalt	99.7207	99.4429	100.0000	94.4210	357	2	357	0	0
qzeng-custom	INDEL	D1_5	segdup	homalt	99.3034	99.4429	99.1643	93.1723	357	2	356	3	2	66.6667
asubramanian-gatk	INDEL	D1_5	segdup	homalt	99.5816	99.4429	99.7207	94.5193	357	2	357	1	1	100.0000
gduggal-bwafb	INDEL	D1_5	segdup	homalt	99.7207	99.4429	100.0000	94.9012	357	2	356	0	0
astatham-gatk	INDEL	D1_5	*	*	99.5682	99.4433	99.6934	60.4898	145928	817	145983	449	317	70.6013
ghariani-varprowl	SNP	ti	map_siren	homalt	99.5932	99.4435	99.7434	52.5183	37705	211	37706	97	56	57.7320
ckim-dragen	SNP	tv	map_l150_m2_e1	homalt	99.5761	99.4436	99.7089	69.3912	4111	23	4111	12	10	83.3333
ckim-dragen	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3065	99.4444	99.1690	87.5731	716	4	716	6	6	100.0000
cchapple-custom	INDEL	I1_5	func_cds	*	99.4429	99.4444	99.4413	30.0781	179	1	178	1	0	0.0000

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