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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1448 1449 1450 1451 1452 1453 1454 1455 1456 ... 1720 1721 » 72551-72600 / 86044 show all
ckim-gatk	SNP	tv	*	*	99.5705	99.3991	99.7425	27.2376	963863	5827	963776	2488	84	3.3762
hfeng-pmm3	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6987	99.3992	100.0000	81.4570	1489	9	1489	0	0
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	97.8832	99.4000	96.4120	64.9755	18057	109	18057	672	654	97.3214
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	97.8832	99.4000	96.4120	64.9755	18057	109	18057	672	654	97.3214
hfeng-pmm2	SNP	*	map_l100_m0_e0	*	99.2701	99.4001	99.1404	70.5461	32644	197	32640	283	34	12.0141
eyeh-varpipe	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5010	99.4006	99.6016	52.3483	25207	152	26749	107	95	88.7850
ckim-vqsr	INDEL	D1_5	map_siren	homalt	99.4864	99.4007	99.5723	81.4444	1161	7	1164	5	4	80.0000
raldana-dualsentieon	INDEL	D1_5	map_siren	homalt	99.5289	99.4007	99.6575	79.9209	1161	7	1164	4	4	100.0000
ndellapenna-hhga	INDEL	D1_5	map_siren	homalt	99.1884	99.4007	98.9770	79.1578	1161	7	1161	12	11	91.6667
ckim-gatk	INDEL	D1_5	map_siren	homalt	99.4864	99.4007	99.5723	81.4444	1161	7	1164	5	4	80.0000
rpoplin-dv42	SNP	*	map_siren	het	99.5263	99.4010	99.6518	54.9841	90446	545	90433	316	159	50.3165
raldana-dualsentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6003	99.4016	99.7997	45.8452	3987	24	3987	8	0	0.0000
bgallagher-sentieon	SNP	tv	map_l100_m0_e0	homalt	99.6221	99.4020	99.8433	61.4866	3823	23	3823	6	4	66.6667
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.6312	99.4020	99.8614	63.7399	2161	13	2161	3	0	0.0000
jli-custom	SNP	tv	map_l100_m0_e0	homalt	99.6481	99.4020	99.8955	59.7962	3823	23	3823	4	4	100.0000
rpoplin-dv42	INDEL	I1_5	*	homalt	99.6318	99.4026	99.8620	52.4571	60067	361	60064	83	77	92.7711
ltrigg-rtg2	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5504	99.4030	99.6982	59.0103	999	6	991	3	1	33.3333
ckim-vqsr	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5517	99.4030	99.7009	66.4548	999	6	1000	3	2	66.6667
astatham-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5517	99.4030	99.7009	65.6624	999	6	1000	3	2	66.6667
ckim-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.5517	99.4030	99.7009	66.4548	999	6	1000	3	2	66.6667
raldana-dualsentieon	SNP	*	map_l100_m2_e1	*	99.3646	99.4032	99.3261	65.5411	74291	446	74280	504	23	4.5635
hfeng-pmm3	SNP	*	map_l150_m2_e0	*	99.4612	99.4035	99.5190	75.5411	31662	190	31656	153	23	15.0327
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_diTR_11to50	het	98.9501	99.4036	98.5008	62.9678	15666	94	15506	236	204	86.4407
ltrigg-rtg2	SNP	*	map_l125_m0_e0	homalt	99.6639	99.4041	99.9251	65.7800	6672	40	6672	5	4	80.0000
astatham-gatk	INDEL	D6_15	*	het	98.7915	99.4048	98.1857	62.8008	11523	69	11473	212	175	82.5472
ndellapenna-hhga	SNP	*	segdup	het	99.4196	99.4052	99.4339	89.3885	17214	103	17214	98	4	4.0816
gduggal-snapplat	SNP	ti	func_cds	*	99.5243	99.4052	99.6437	28.8978	13705	82	13705	49	5	10.2041
ckim-vqsr	INDEL	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	99.3731	99.4054	99.3408	76.0979	47984	287	47771	317	259	81.7035
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3727	99.4055	99.3399	88.6347	1505	9	1505	10	9	90.0000
ckim-gatk	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.6131	99.4059	99.8211	49.8317	6693	40	6695	12	7	58.3333
ndellapenna-hhga	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.4700	99.4059	99.5342	55.3861	20079	120	20088	94	83	88.2979
egarrison-hhga	SNP	ti	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.5195	99.4061	99.6332	48.7604	10042	60	10049	37	25	67.5676
egarrison-hhga	SNP	*	HG002compoundhet	homalt	99.2639	99.4064	99.1218	35.3785	10718	64	10722	95	82	86.3158
ndellapenna-hhga	SNP	*	HG002compoundhet	homalt	98.7381	99.4064	98.0787	35.7852	10718	64	10720	210	197	93.8095
ltrigg-rtg1	INDEL	D1_5	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	99.6839	99.4064	99.9631	71.3354	21769	130	21655	8	8	100.0000
hfeng-pmm2	SNP	ti	map_l150_m1_e0	*	99.2981	99.4065	99.1899	76.2408	19595	117	19591	160	20	12.5000
ckim-dragen	INDEL	I1_5	HG002complexvar	*	99.5809	99.4065	99.7559	56.6825	33165	198	33105	81	67	82.7160
hfeng-pmm3	SNP	*	map_l150_m2_e1	*	99.4641	99.4070	99.5212	75.5898	32019	191	32013	154	23	14.9351
jlack-gatk	INDEL	*	*	het	98.8624	99.4076	98.3232	61.7242	192983	1150	192623	3285	1088	33.1202
astatham-gatk	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	77.5982	99.4083	63.6364	84.3528	168	1	70	40	39	97.5000
bgallagher-sentieon	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_51to200	het	76.2663	99.4083	61.8644	83.3568	168	1	73	45	44	97.7778
rpoplin-dv42	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	99.6047	99.4083	99.8020	85.1950	504	3	504	1	0	0.0000
ghariani-varprowl	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	88.8489	99.4083	80.3175	86.3311	504	3	506	124	83	66.9355
ndellapenna-hhga	INDEL	D1_5	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5852	99.4085	99.7626	54.0647	25209	150	25209	60	50	83.3333
mlin-fermikit	SNP	*	lowcmp_SimpleRepeat_homopolymer_6to10	homalt	98.6888	99.4087	97.9793	56.5956	6052	36	6061	125	121	96.8000
rpoplin-dv42	SNP	tv	map_siren	het	99.4388	99.4093	99.4683	57.2644	28440	169	28436	152	65	42.7632
hfeng-pmm1	SNP	tv	map_siren	het	99.6130	99.4093	99.8175	56.2607	28440	169	28435	52	14	26.9231
ckim-vqsr	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.1537	99.4096	96.9291	83.2983	1347	8	1231	39	30	76.9231
dgrover-gatk	INDEL	D16_PLUS	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.0391	99.4096	96.7059	82.8744	1347	8	1233	42	28	66.6667
ltrigg-rtg1	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6218	99.4099	99.8345	72.5123	5391	32	5430	9	0	0.0000

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