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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72501-72550 / 86044 show all
ltrigg-rtg2INDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.0959
99.3912
98.8024
75.4321
653466082
25.0000
hfeng-pmm2INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.4924
99.3915
99.5935
55.2320
490349020
0.0000
jli-customINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5935
99.3915
99.7963
54.1550
490349010
0.0000
rpoplin-dv42INDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.3915
99.3915
99.3915
54.5622
490349032
66.6667
raldana-dualsentieonINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5935
99.3915
99.7963
55.2823
490349010
0.0000
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5758
99.3915
99.7609
70.9351
5390335423134
30.7692
ckim-dragenSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5758
99.3915
99.7609
70.9351
5390335423134
30.7692
ckim-dragenINDELD1_5HG002complexvar*
99.5269
99.3917
99.6625
58.3864
325161993247811086
78.1818
jlack-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3078
99.3917
99.2240
48.4791
2941182941232
8.6957
ltrigg-rtg1SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.5396
99.3917
97.7019
59.4515
2941182976700
0.0000
gduggal-snapfbSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
88.5028
99.3917
79.7641
72.5419
294118297675516
2.1192
jlack-gatkSNP*map_siren*
98.0143
99.3920
96.6743
64.0744
1453398891453164999358
7.1614
jlack-gatkINDELI1_5HG002compoundhethomalt
60.9506
99.3921
43.9516
87.9475
3272327417414
99.2806
hfeng-pmm3INDELI1_5HG002compoundhethomalt
83.8462
99.3921
72.5055
83.0068
3272327124123
99.1935
hfeng-pmm2INDELI1_5HG002compoundhethomalt
80.1471
99.3921
67.1458
86.0378
3272327160159
99.3750
hfeng-pmm1INDELI1_5HG002compoundhethomalt
83.5249
99.3921
72.0264
83.4186
3272327127126
99.2126
jmaeng-gatkINDELI1_5HG002compoundhethomalt
73.9819
99.3921
58.9189
89.0727
3272327228227
99.5614
hfeng-pmm1SNP*map_l100_m2_e0*
99.5855
99.3929
99.7787
64.6417
735154497350416349
30.0613
ckim-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.7777
99.3930
98.1700
65.9733
124457612285229215
93.8865
ckim-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.2727
99.3932
99.1525
71.5271
819581971
14.2857
astatham-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5140
99.3932
99.6350
71.2386
819581931
33.3333
ckim-vqsrINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5140
99.3932
99.6350
71.6258
819581931
33.3333
dgrover-gatkINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.3932
99.3932
99.3932
71.3192
819581951
20.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.6831
99.3940
99.9739
63.4875
11482701148233
100.0000
astatham-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.6831
99.3940
99.9739
63.4875
11482701148233
100.0000
raldana-dualsentieonSNPtimap_sirenhet
99.3661
99.3941
99.3382
55.1273
62004378619954138
1.9371
ghariani-varprowlSNP*map_sirenhomalt
99.5027
99.3944
99.6112
54.3239
5482233454823214127
59.3458
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.2677
99.3946
99.1411
57.1258
4269264271376
16.2162
hfeng-pmm2SNP*map_l150_m2_e1*
99.2528
99.3946
99.1113
77.7651
320151953200928734
11.8467
ghariani-varprowlSNPtilowcmp_SimpleRepeat_triTR_11to50het
98.2105
99.3947
97.0542
49.5042
2463152471750
0.0000
egarrison-hhgaSNPtilowcmp_SimpleRepeat_triTR_11to50het
99.5956
99.3947
99.7973
28.9459
246315246251
20.0000
jli-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.0767
99.3951
98.7603
83.0758
2629162629336
18.1818
jli-customSNPtvlowcmp_AllRepeats_51to200bp_gt95identity_mergedhet
98.8967
99.3952
98.4032
71.6308
9866986162
12.5000
bgallagher-sentieonINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.4556
99.3958
99.5154
60.4361
164510164385
62.5000
astatham-gatkINDELD6_15lowcmp_SimpleRepeat_quadTR_11to50het
99.4857
99.3958
99.5758
60.5358
164510164374
57.1429
raldana-dualsentieonSNP*map_l100_m2_e0*
99.3627
99.3970
99.3284
65.5143
735184467350749723
4.6278
rpoplin-dv42SNPtimap_sirenhet
99.5664
99.3973
99.7362
53.8516
620063766199716494
57.3171
bgallagher-sentieonSNPtvmap_l150_m0_e0homalt
99.5475
99.3976
99.6979
74.9100
13208132043
75.0000
jli-customSNPtvmap_l150_m0_e0homalt
99.5851
99.3976
99.7732
73.0220
13208132033
100.0000
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331het
87.1298
99.3978
77.5574
83.2455
9078558484245550
2.0367
eyeh-varpipeSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
87.1298
99.3978
77.5574
83.2455
9078558484245550
2.0367
hfeng-pmm1SNP*map_l100_m2_e1*
99.5878
99.3979
99.7783
64.6489
742874507427616549
29.6970
bgallagher-sentieonINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.5855
99.3980
99.7736
69.6866
264216264464
66.6667
astatham-gatkINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10*
99.6042
99.3980
99.8112
69.7820
264216264353
60.0000
gduggal-bwafbSNPtimap_siren*
99.3101
99.3981
99.2222
57.2359
9975160499755782145
18.5422
egarrison-hhgaINDELD1_5lowcmp_SimpleRepeat_triTR_11to50homalt
99.2492
99.3985
99.1004
39.5833
1322813221210
83.3333
ckim-gatkINDELD16_PLUS*het
97.6163
99.3985
95.8968
79.2687
314019289812470
56.4516
egarrison-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_mergedhet
99.5782
99.3986
99.7586
57.7309
247915247962
33.3333
ckim-vqsrSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5262
99.3991
99.6536
77.7226
6617406617239
39.1304
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged*
99.5562
99.3991
99.7137
77.6038
6617406617195
26.3158