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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
72051-72100 / 86044 show all
bgallagher-sentieonINDELD1_5map_l125_m0_e0homalt
98.9899
99.3243
98.6577
87.1330
147114722
100.0000
gduggal-bwafbSNP*segduphet
98.4151
99.3244
97.5223
92.8812
172001171720043712
2.7460
ckim-dragenSNPtvmap_l125_m0_e0homalt
99.4590
99.3246
99.5937
66.7118
220615220697
77.7778
qzeng-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.5278
99.3248
97.7435
64.5151
4266294245987
7.1429
jlack-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.3017
99.3248
99.2786
49.2620
4266294266312
6.4516
dgrover-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.4637
99.3248
99.6031
48.7496
4266294266172
11.7647
egarrison-hhgaINDELD1_5*het
97.6225
99.3251
95.9773
54.9367
869835918741836643399
92.7675
gduggal-bwafbSNPtvmap_sirenhet
98.7335
99.3254
98.1487
63.6405
284161932841653669
12.8731
ckim-dragenSNP*map_l125_m1_e0homalt
99.5672
99.3256
99.8098
61.0436
16791114167963229
90.6250
dgrover-gatkSNP*map_l125_m1_e0homalt
99.6085
99.3256
99.8929
63.9547
16791114167911813
72.2222
dgrover-gatkSNPtimap_l125_m2_e0*
99.3734
99.3258
99.4210
73.9134
300542043005017542
24.0000
hfeng-pmm1INDEL*func_cds*
99.4386
99.3258
99.5516
42.1530
442344420
0.0000
jli-customINDEL*func_cds*
99.4376
99.3258
99.5495
41.4248
442344221
50.0000
hfeng-pmm2INDEL*func_cds*
99.4386
99.3258
99.5516
44.3196
442344420
0.0000
hfeng-pmm3INDEL*func_cds*
99.6618
99.3258
100.0000
42.1121
442344400
jmaeng-gatkINDELD1_5lowcmp_SimpleRepeat_quadTR_11to50*
99.5149
99.3263
99.7043
51.4820
1179580118003521
60.0000
qzeng-customSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
98.3268
99.3263
97.3471
64.9445
132791321363
8.3333
gduggal-snapfbSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
78.0360
99.3263
64.2617
73.0595
1327913367436
0.8075
dgrover-gatkSNP*map_l125_m2_e1*
99.3336
99.3263
99.3409
74.2508
468843184687831169
22.1865
dgrover-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged*
99.5499
99.3263
99.7744
49.3526
13279132730
0.0000
jli-customSNP*map_l100_m2_e0*
99.4726
99.3267
99.6190
63.1033
734664987346328179
28.1139
dgrover-gatkSNP*map_l125_m2_e1homalt
99.6110
99.3269
99.8967
66.5258
17414118174141813
72.2222
ckim-vqsrINDEL*HG002complexvarhet
99.5556
99.3270
99.7852
57.9433
45901311455189861
62.2449
hfeng-pmm3SNPtvmap_l125_m2_e1het
99.3837
99.3272
99.4402
72.3386
104827110480595
8.4746
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331*
97.8898
99.3274
96.4931
80.2111
14473981447352628
5.3232
jlack-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
97.8898
99.3274
96.4931
80.2111
14473981447352628
5.3232
dgrover-gatkINDEL*lowcmp_SimpleRepeat_diTR_11to50het
98.9340
99.3274
98.5437
62.8374
1565410615496229203
88.6463
ltrigg-rtg2INDELD6_15lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
99.4163
99.3280
99.5048
58.5822
32522232151613
81.2500
hfeng-pmm3SNP*map_l125_m2_e0het
99.4247
99.3281
99.5214
72.2786
291211972911514013
9.2857
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331*
98.8701
99.3283
98.4162
75.2675
453953074542573160
8.2079
cchapple-customSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged*
98.8701
99.3283
98.4162
75.2675
453953074542573160
8.2079
dgrover-gatkSNPtimap_l125_m1_e0*
99.3758
99.3284
99.4233
72.4326
291381972913416941
24.2604
dgrover-gatkSNPtvmap_l125_m1_e0het
99.0398
99.3285
98.7528
76.5217
10058681005612722
17.3228
dgrover-gatkSNP*map_l125_m2_e1het
99.1713
99.3286
99.0144
77.3174
294411992943529356
19.1126
jlack-gatkSNPtvmap_l100_m2_e1het
94.4530
99.3286
90.0336
81.3037
1583110715827175290
5.1370
jpowers-varprowlSNP**het
99.3161
99.3290
99.3033
25.1238
186101012572186133513059459
3.5148
dgrover-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_mergedhet
98.7577
99.3291
98.1927
66.2045
124378412279226215
95.1327
jlack-gatkINDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhomalt
97.2339
99.3295
95.2250
57.6340
114077711407572562
98.2517
ckim-gatkSNPtisegdup*
98.9344
99.3295
98.5425
92.9771
19406131194042878
2.7875
ndellapenna-hhgaSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged*
99.5220
99.3296
99.7152
58.2062
3852263852114
36.3636
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_mergedhet
97.5366
99.3299
95.8069
62.8145
26681827191191
0.8403
bgallagher-sentieonSNP*map_l150_m1_e0*
99.1019
99.3303
98.8746
75.7599
304042053039834661
17.6301
ckim-dragenINDEL*lowcmp_SimpleRepeat_quadTR_11to50*
99.4504
99.3304
99.5707
59.9377
19729133197138564
75.2941
hfeng-pmm2SNPtvmap_l150_m2_e1*
99.1408
99.3306
98.9518
77.9286
11425771142312114
11.5702
gduggal-bwafbSNP*lowcmp_AllRepeats_lt51bp_gt95identity_mergedhet
98.1407
99.3309
96.9788
67.1842
35182237352771099205
18.6533
rpoplin-dv42SNPtimap_l125_m2_e0homalt
99.5456
99.3309
99.7613
68.8663
1128276112822726
96.2963
ciseli-customSNPtvlowcmp_SimpleRepeat_homopolymer_6to10homalt
97.5412
99.3311
95.8146
61.4853
386126384616874
44.0476
astatham-gatkSNPtimap_l100_m1_e0homalt
99.6258
99.3318
99.9216
57.0466
17840120178401413
92.8571
hfeng-pmm3SNP*map_l125_m2_e1het
99.4275
99.3320
99.5233
72.3246
294421982943614113
9.2199
bgallagher-sentieonSNPtimap_l150_m2_e0*
99.1869
99.3321
99.0422
77.0287
203751372037119737
18.7817