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Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1436 1437 1438 1439 1440 1441 1442 1443 1444 ... 1720 1721 » 71951-72000 / 86044 show all
ckim-dragen	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	hetalt	99.5710	99.3151	99.8282	17.5637	580	4	581	1	1	100.0000
ckim-dragen	SNP	*	map_l125_m2_e0	homalt	99.5644	99.3151	99.8150	63.8939	17256	119	17261	32	29	90.6250
ckim-gatk	INDEL	D1_5	HG002complexvar	*	99.5163	99.3153	99.7181	58.5688	32491	224	32545	92	72	78.2609
dgrover-gatk	SNP	tv	map_l125_m2_e1	*	99.2530	99.3156	99.1905	74.7864	16543	114	16541	135	27	20.0000
hfeng-pmm1	SNP	tv	map_l125_m2_e1	*	99.4888	99.3156	99.6626	71.0607	16543	114	16541	56	16	28.5714
jli-custom	SNP	tv	map_l100_m2_e1	*	99.4258	99.3157	99.5362	64.2630	25110	173	25109	117	30	25.6410
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.5609	99.3157	97.8175	79.7318	4209	29	4213	94	1	1.0638
asubramanian-gatk	INDEL	D6_15	HG002complexvar	homalt	99.0619	99.3157	98.8095	62.8201	1161	8	1162	14	14	100.0000
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
egarrison-hhga	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.4755	99.3161	99.6354	69.3829	11473	79	11478	42	36	85.7143
bgallagher-sentieon	SNP	*	map_l100_m0_e0	het	98.8545	99.3162	98.3971	73.2385	21060	145	21056	343	49	14.2857
astatham-gatk	SNP	*	map_l100_m2_e0	homalt	99.6137	99.3169	99.9123	60.3292	27335	188	27335	24	19	79.1667
jli-custom	INDEL	*	map_l125_m1_e0	homalt	99.2491	99.3169	99.1814	84.5684	727	5	727	6	4	66.6667
gduggal-bwafb	SNP	*	map_l100_m2_e0	homalt	99.5956	99.3169	99.8758	64.6135	27335	188	27335	34	20	58.8235
hfeng-pmm1	INDEL	*	map_l125_m1_e0	homalt	99.2491	99.3169	99.1814	84.1205	727	5	727	6	3	50.0000
qzeng-custom	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.5348	99.3169	97.7649	70.3556	17448	120	17496	400	17	4.2500
jpowers-varprowl	SNP	ti	HG002complexvar	*	99.5182	99.3169	99.7203	18.7923	504961	3473	505119	1417	799	56.3867
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4966	99.3171	99.6769	61.8156	28067	193	28070	91	68	74.7253
jlack-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	98.8719	99.3172	98.4305	81.7659	6836	47	6836	109	22	20.1835
jpowers-varprowl	SNP	tv	*	het	99.1037	99.3176	98.8908	29.6901	587657	4038	587824	6593	166	2.5178
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6300	99.3177	99.9443	71.5425	5386	37	5386	3	3	100.0000
astatham-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6300	99.3177	99.9443	71.5425	5386	37	5386	3	3	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	homalt	99.6208	99.3177	99.9258	72.3505	5386	37	5386	4	4	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	homalt	99.6208	99.3177	99.9258	72.3505	5386	37	5386	4	4	100.0000
ckim-dragen	INDEL	D1_5	lowcmp_SimpleRepeat_diTR_11to50	het	99.4368	99.3178	99.5561	50.0867	10336	71	10317	46	37	80.4348
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.4449	99.3179	97.5871	73.2136	728	5	728	18	14	77.7778
astatham-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.7788	99.3179	98.2456	73.2684	728	5	728	13	13	100.0000
dgrover-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.5115	99.3179	97.7181	73.3548	728	5	728	17	13	76.4706
eyeh-varpipe	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	99.4124	99.3179	99.5070	45.2160	1456	10	1413	7	2	28.5714
jmaeng-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	98.6450	99.3179	97.9812	73.0406	728	5	728	15	10	66.6667
ndellapenna-hhga	SNP	*	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.4656	99.3180	99.6136	37.1650	6699	46	6703	26	25	96.1538
asubramanian-gatk	INDEL	D1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	99.6034	99.3181	99.8903	51.3153	3641	25	3642	4	4	100.0000
hfeng-pmm3	INDEL	D1_5	*	het	99.5975	99.3183	99.8783	55.2507	86977	597	86982	106	53	50.0000
hfeng-pmm3	SNP	ti	map_l125_m0_e0	*	99.3611	99.3183	99.4039	74.1190	12675	87	12673	76	11	14.4737
gduggal-bwafb	SNP	*	map_l100_m1_e0	homalt	99.5971	99.3186	99.8771	62.3452	26819	184	26819	33	19	57.5758
raldana-dualsentieon	SNP	tv	map_l100_m1_e0	het	99.1452	99.3189	98.9720	68.0652	15312	105	15308	159	1	0.6289
gduggal-snapfb	SNP	tv	segdup	het	98.0225	99.3191	96.7593	93.1540	5251	36	5255	176	3	1.7046
dgrover-gatk	SNP	*	map_l125_m2_e0	*	99.3279	99.3194	99.3363	74.2156	46405	318	46399	310	69	22.2581
hfeng-pmm3	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6122	99.3198	99.9063	37.9962	10659	73	10659	10	4	40.0000
hfeng-pmm3	INDEL	D1_5	map_siren	*	99.3769	99.3199	99.4339	78.1455	3505	24	3513	20	5	25.0000
cchapple-custom	SNP	tv	lowcmp_SimpleRepeat_diTR_11to50	het	99.3270	99.3199	99.3340	66.8350	3067	21	3132	21	9	42.8571
ndellapenna-hhga	INDEL	I1_5	*	homalt	99.4589	99.3199	99.5983	51.5644	60017	411	60008	242	186	76.8595
gduggal-bwafb	SNP	*	map_l100_m2_e1	homalt	99.5977	99.3200	99.8770	64.6290	27607	189	27607	34	20	58.8235
astatham-gatk	SNP	*	map_l100_m2_e1	homalt	99.6157	99.3200	99.9131	60.3111	27607	189	27607	24	19	79.1667
hfeng-pmm3	SNP	tv	map_l125_m2_e0	het	99.3771	99.3201	99.4342	72.2814	10371	71	10369	59	5	8.4746
bgallagher-sentieon	SNP	ti	map_l150_m1_e0	*	99.1792	99.3202	99.0387	75.5864	19578	134	19574	190	36	18.9474
ckim-vqsr	SNP	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5978	99.3202	99.8769	36.6057	7305	50	7301	9	4	44.4444
ltrigg-rtg2	INDEL	I1_5	*	*	99.5218	99.3203	99.7241	55.5467	149639	1024	148928	412	159	38.5922
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	91.2302	99.3206	84.3587	81.4184	14472	99	13726	2545	73	2.8684
eyeh-varpipe	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	91.2302	99.3206	84.3587	81.4184	14472	99	13726	2545	73	2.8684

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