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Explore HG002 comparison results

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Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1432 1433 1434 1435 1436 1437 1438 1439 1440 ... 1720 1721 » 71751-71800 / 86044 show all
egarrison-hhga	SNP	tv	lowcmp_AllRepeats_lt51bp_gt95identity_merged	*	99.5328	99.2846	99.7822	62.2610	27480	198	27491	60	36	60.0000
egarrison-hhga	SNP	ti	map_l100_m2_e1	*	99.5683	99.2846	99.8537	64.5157	49131	354	49132	72	32	44.4444
astatham-gatk	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6156	99.2848	99.9486	75.9210	3887	28	3887	2	2	100.0000
cchapple-custom	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	homalt	99.6282	99.2848	99.9740	70.9201	3887	28	3839	1	1	100.0000
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331	het	98.9363	99.2849	98.5900	75.9853	19439	140	19439	278	23	8.2734
ckim-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	het	98.9363	99.2849	98.5900	75.9853	19439	140	19439	278	23	8.2734
bgallagher-sentieon	SNP	*	map_l125_m0_e0	homalt	99.5370	99.2849	99.7904	67.2503	6664	48	6664	14	10	71.4286
jlack-gatk	SNP	*	map_siren	homalt	99.6008	99.2857	99.9179	50.5286	54762	394	54753	45	30	66.6667
jlack-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	96.8247	99.2858	94.4828	49.5258	9453	68	9453	552	547	99.0942
hfeng-pmm3	INDEL	*	map_l100_m2_e0	homalt	99.2469	99.2863	99.2076	82.1525	1252	9	1252	10	4	40.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.8791	99.2863	98.4753	80.3955	14467	104	14467	224	14	6.2500
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.8791	99.2863	98.4753	80.3955	14467	104	14467	224	14	6.2500
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331	*	98.3555	99.2863	97.4421	79.1072	14467	104	14476	380	19	5.0000
cchapple-custom	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_merged	*	98.3555	99.2863	97.4421	79.1072	14467	104	14476	380	19	5.0000
ghariani-varprowl	SNP	tv	map_siren	homalt	99.3038	99.2865	99.3211	57.8404	17117	123	17117	117	71	60.6838
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	*	99.2545	99.2866	99.2223	77.4843	1531	11	1531	12	9	75.0000
egarrison-hhga	SNP	ti	map_siren	het	99.5580	99.2867	99.8308	53.2460	61937	445	61938	105	38	36.1905
hfeng-pmm3	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	98.8636	99.2867	98.4441	47.1402	2784	20	2784	44	43	97.7273
asubramanian-gatk	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	homalt	97.1397	99.2867	95.0836	54.6384	2784	20	2785	144	133	92.3611
ltrigg-rtg2	INDEL	*	lowcmp_SimpleRepeat_triTR_11to50	*	99.5382	99.2871	99.7905	44.9407	6685	48	6668	14	4	28.5714
bgallagher-sentieon	SNP	ti	map_l125_m0_e0	homalt	99.5535	99.2875	99.8209	66.4916	4459	32	4459	8	6	75.0000
jlack-gatk	INDEL	D1_5	HG002complexvar	*	99.4067	99.2878	99.5259	58.0276	32482	233	32539	155	92	59.3548
egarrison-hhga	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	het	99.5363	99.2878	99.7860	56.6980	16312	117	16318	35	21	60.0000
jlack-gatk	SNP	ti	map_siren	homalt	99.6031	99.2879	99.9204	49.0602	37646	270	37640	30	20	66.6667
ckim-vqsr	SNP	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3603	99.2881	99.4326	81.7523	6834	49	6834	39	15	38.4615
dgrover-gatk	SNP	tv	map_l125_m1_e0	*	99.2231	99.2882	99.1581	73.2603	15902	114	15900	135	27	20.0000
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4458	99.2885	99.6035	87.7940	1256	9	1256	5	5	100.0000
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	*	99.4064	99.2885	99.5246	88.1335	1256	9	1256	6	6	100.0000
ltrigg-rtg1	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6431	99.2888	100.0000	35.3991	698	5	688	0	0
gduggal-snapfb	SNP	tv	lowcmp_SimpleRepeat_quadTR_11to50	*	91.9883	99.2888	85.6879	49.6867	7399	53	7430	1241	43	3.4650
astatham-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_triTR_11to50	het	99.6431	99.2888	100.0000	46.4313	698	5	698	0	0
bgallagher-sentieon	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	98.6266	99.2892	97.9729	65.4849	12432	89	12276	254	243	95.6693
ciseli-custom	SNP	tv	segdup	homalt	97.7133	99.2897	96.1862	90.1152	3215	23	3203	127	72	56.6929
bgallagher-sentieon	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	99.2629	99.2900	99.2358	50.5266	1818	13	1818	14	0	0.0000
ltrigg-rtg1	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	97.7961	99.2900	96.3466	63.0116	1818	13	1846	70	0	0.0000
qzeng-custom	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	het	98.0362	99.2900	96.8136	69.3472	1818	13	1823	60	2	3.3333
ckim-dragen	SNP	*	map_l100_m1_e0	*	98.6742	99.2901	98.0660	67.7530	71889	514	71900	1418	151	10.6488
raldana-dualsentieon	SNP	tv	map_l125_m2_e0	*	99.2122	99.2904	99.1340	71.8789	16372	117	16370	143	4	2.7972
raldana-dualsentieon	SNP	*	map_l150_m0_e0	homalt	99.5464	99.2908	99.8033	71.7833	4060	29	4060	8	5	62.5000
jli-custom	INDEL	D16_PLUS	*	homalt	99.0858	99.2908	98.8817	67.1754	1680	12	1680	19	13	68.4211
ckim-vqsr	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_51to200bp_gt95identity_merged	homalt	99.5998	99.2908	99.9108	42.6598	1120	8	1120	1	1	100.0000
dgrover-gatk	INDEL	D1_5	map_siren	*	99.2924	99.2916	99.2932	82.3565	3504	25	3512	25	5	20.0000
astatham-gatk	INDEL	*	HG002complexvar	*	99.4827	99.2916	99.6745	58.3541	76393	545	76257	249	212	85.1406
hfeng-pmm1	SNP	ti	lowcmp_SimpleRepeat_quadTR_11to50	*	99.6121	99.2918	99.9344	37.2432	10656	76	10656	7	1	14.2857
cchapple-custom	SNP	ti	lowcmp_AllRepeats_51to200bp_gt95identity_merged	*	99.3846	99.2919	99.4776	66.9410	3225	23	3237	17	3	17.6471
ckim-dragen	SNP	tv	map_l100_m2_e1	*	98.6522	99.2920	98.0206	71.3656	25104	179	25107	507	45	8.8757
jpowers-varprowl	SNP	*	func_cds	het	99.1057	99.2922	98.9199	32.1729	11082	79	11082	121	2	1.6529
astatham-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	het	99.6057	99.2925	99.9209	50.5187	2526	18	2526	2	0	0.0000
ckim-dragen	SNP	tv	map_l100_m2_e0	*	98.6448	99.2929	98.0051	71.3118	24856	177	24859	506	45	8.8933
rpoplin-dv42	SNP	ti	map_l100_m2_e0	*	99.4660	99.2933	99.6392	64.7198	48615	346	48608	176	120	68.1818

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