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Explore HG002 comparison results
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EntryTypeSubtypeSubsetGenotypeF-scoreRecall PrecisionFrac_NATruth TPTruth FNQuery TPQuery FPFP gt% FP ma
71701-71750 / 86044 show all
gduggal-bwaplatSNPtifunc_cds*
99.4984
99.2747
99.7231
31.1374
1368710013687384
10.5263
bgallagher-sentieonSNP*map_l150_m2_e0het
98.7961
99.2748
98.3220
79.7541
199871461998134150
14.6628
gduggal-bwafbSNPtvlowcmp_SimpleRepeat_quadTR_11to50het
98.2925
99.2749
97.3294
48.4124
465534466512817
13.2812
hfeng-pmm3INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.9842
99.2753
98.6948
48.1764
9452699452125120
96.0000
hfeng-pmm1INDEL*lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.9583
99.2753
98.6433
48.3478
9452699452130127
97.6923
jmaeng-gatkSNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged*
99.4555
99.2754
99.6364
86.7438
10968109643
75.0000
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5807
99.2754
99.8880
68.6524
1685212316941198
42.1053
ltrigg-rtg1SNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5807
99.2754
99.8880
68.6524
1685212316941198
42.1053
ndellapenna-hhgaSNPtimap_l150_m0_e0homalt
99.5641
99.2756
99.8543
71.8779
274120274144
100.0000
raldana-dualsentieonSNPtvmap_l125_m1_e0*
99.1952
99.2757
99.1147
70.0226
15900116158981424
2.8169
ckim-dragenSNPtimap_l125_m1_e0homalt
99.5597
99.2757
99.8453
60.3228
1096580109701716
94.1176
asubramanian-gatkINDELD1_5lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_mergedhomalt
98.1100
99.2769
96.9703
51.0036
5080375089159149
93.7107
qzeng-customINDELI1_5lowcmp_SimpleRepeat_homopolymer_6to10homalt
99.2899
99.2769
99.3030
49.7051
961789766326
41.2698
hfeng-pmm2SNPtilowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged*
99.5873
99.2770
99.8996
46.3020
398229398240
0.0000
egarrison-hhgaSNPtimap_l100_m2_e0*
99.5647
99.2770
99.8541
64.5210
48607354486087132
45.0704
jlack-gatkSNP*map_l100_m2_e1het
95.7463
99.2772
92.4580
79.7064
46559339465483797267
7.0319
hfeng-pmm2INDELD1_5segduphet
99.3497
99.2775
99.4220
94.7071
687568840
0.0000
rpoplin-dv42SNP*map_l100_m2_e1*
99.4091
99.2775
99.5411
65.1919
7419754074186342199
58.1871
rpoplin-dv42INDELD1_5segduphet
99.4935
99.2775
99.7106
94.2248
687568922
100.0000
jmaeng-gatkINDELD1_5segduphet
95.2904
99.2775
91.6112
96.4890
6875688630
0.0000
hfeng-pmm1INDELD1_5segduphet
99.2064
99.2775
99.1354
93.9383
687568860
0.0000
bgallagher-sentieonSNPtimap_l100_m0_e0het
98.9661
99.2777
98.6565
72.6282
138821011387918928
14.8148
jpowers-varprowlSNPtisegdup*
98.3696
99.2783
97.4774
91.2225
193961411939850238
7.5697
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331het
98.7785
99.2790
98.2829
78.8740
285052072850549833
6.6265
ckim-gatkSNP*lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhet
98.7785
99.2790
98.2829
78.8740
285052072850549833
6.6265
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
96.0496
99.2794
93.0233
76.1666
1240912409384
90.3226
ckim-dragenINDELD16_PLUSlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
96.0496
99.2794
93.0233
76.1666
1240912409384
90.3226
jli-customSNPtvmap_l125_m0_e0homalt
99.5485
99.2796
99.8189
66.7820
220516220544
100.0000
bgallagher-sentieonSNPtvmap_l125_m0_e0homalt
99.5036
99.2796
99.7286
68.6827
220516220564
66.6667
astatham-gatkSNPtvmap_l100_m2_e1homalt
99.5848
99.2797
99.8918
61.7406
9235679235106
60.0000
jmaeng-gatkINDEL*lowcmp_SimpleRepeat_quadTR_11to50het
99.4180
99.2798
99.5566
63.6361
1102880110024918
36.7347
jmaeng-gatkSNP*segdup*
98.5236
99.2803
97.7783
93.6584
278652022785963314
2.2117
jlack-gatkSNPtvmap_sirenhomalt
99.5956
99.2807
99.9124
53.4780
17116124171131510
66.6667
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331homalt
99.5930
99.2808
99.9072
72.4630
538439538455
100.0000
jmaeng-gatkSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_mergedhomalt
99.5930
99.2808
99.9072
72.4630
538439538455
100.0000
qzeng-customSNPtilowcmp_AllRepeats_lt51bp_gt95identity_merged*
99.0978
99.2811
98.9152
61.5160
277582012790230667
21.8954
ckim-dragenSNPtvmap_l100_m1_e0*
98.6576
99.2817
98.0414
69.3325
243251762432848645
9.2593
bgallagher-sentieonSNPtvlowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_mergedhet
99.2817
99.2817
99.2817
83.4450
2626192626196
31.5789
astatham-gatkSNPtilowcmp_SimpleRepeat_homopolymer_6to10*
99.6158
99.2821
99.9518
44.5938
622345622332
66.6667
bgallagher-sentieonINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.5204
99.2823
99.7596
46.4607
415341511
100.0000
jlack-gatkINDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.4012
99.2823
99.5204
47.6788
415341521
50.0000
hfeng-pmm2INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6399
99.2823
100.0000
45.8931
415341500
hfeng-pmm1INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6399
99.2823
100.0000
45.3947
415341500
hfeng-pmm3INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.6399
99.2823
100.0000
45.1783
415341500
ltrigg-rtg2INDELI6_15lowcmp_SimpleRepeat_triTR_11to50*
99.2797
99.2823
99.2771
46.2435
415341230
0.0000
raldana-dualsentieonINDELI1_5*het
99.5073
99.2827
99.7331
57.9285
7847456778457210142
67.6190
bgallagher-sentieonSNP*map_l150_m2_e1het
98.8048
99.2830
98.3312
79.8100
202171462021134350
14.5773
rpoplin-dv42SNPtimap_l100_m1_e0*
99.4597
99.2844
99.6356
62.6996
4758834347581174118
67.8161
ckim-vqsrINDEL*map_sirenhomalt
99.3599
99.2844
99.4355
81.7137
2636192642158
53.3333
ckim-gatkINDEL*map_sirenhomalt
99.3412
99.2844
99.3980
81.7081
2636192642169
56.2500