PrecisionFDA
Truth Challenge

Engage and improve DNA test results with our community challenges

Explore HG002 comparison results

Use this interactive explorer to filter all results across submission entries and multiple dimensions.

Entry	Type	Subtype	Subset	Genotype	F-score	Recall	Precision	Frac_NA	Truth TP	Truth FN	Query TP	Query FP	FP gt	% FP ma

« 1 2 ... 1427 1428 1429 1430 1431 1432 1433 1434 1435 ... 1720 1721 » 71501-71550 / 86044 show all
qzeng-custom	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	het	98.7057	99.2433	98.1739	67.8653	35151	268	35268	656	60	9.1463
hfeng-pmm2	SNP	tv	map_l125_m2_e0	het	99.0157	99.2434	98.7891	75.7772	10363	79	10361	127	11	8.6614
ckim-gatk	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.2626	99.2439	99.2814	84.2685	2625	20	2625	19	7	36.8421
ckim-dragen	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.4322	99.2443	99.6207	88.9340	788	6	788	3	3	100.0000
ckim-vqsr	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3069	99.2443	99.3695	89.2982	788	6	788	5	5	100.0000
ltrigg-rtg2	SNP	tv	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3589	99.2443	99.4737	85.1185	788	6	756	4	0	0.0000
ckim-dragen	INDEL	I1_5	segdup	*	97.2226	99.2446	95.2813	95.0536	1051	8	1050	52	5	9.6154
dgrover-gatk	INDEL	I1_5	segdup	*	99.2921	99.2446	99.3396	94.6513	1051	8	1053	7	2	28.5714
rpoplin-dv42	SNP	tv	map_l100_m2_e1	*	99.2936	99.2446	99.3427	66.1225	25092	191	25088	166	80	48.1928
jmaeng-gatk	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_all_gt95identity_merged	het	99.3974	99.2449	99.5503	79.5805	4206	32	4206	19	5	26.3158
ndellapenna-hhga	SNP	tv	lowcmp_SimpleRepeat_triTR_11to50	*	99.5204	99.2464	99.7960	35.7063	3424	26	3425	7	4	57.1429
raldana-dualsentieon	INDEL	I1_5	map_l100_m2_e0	homalt	99.3402	99.2467	99.4340	80.8110	527	4	527	3	2	66.6667
jlack-gatk	INDEL	I1_5	map_l100_m2_e0	homalt	99.1533	99.2467	99.0602	82.1116	527	4	527	5	3	60.0000
egarrison-hhga	INDEL	I1_5	map_l100_m2_e0	homalt	99.1533	99.2467	99.0602	83.0249	527	4	527	5	2	40.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	*	99.2854	99.2467	99.3242	70.6721	21607	164	21604	147	34	23.1293
gduggal-snapfb	INDEL	I1_5	map_l100_m2_e0	homalt	98.6891	99.2467	98.1378	87.1161	527	4	527	10	4	40.0000
hfeng-pmm3	SNP	*	map_l125_m0_e0	*	99.2955	99.2468	99.3441	74.5016	19239	146	19236	127	18	14.1732
hfeng-pmm2	SNP	*	map_l125_m0_e0	*	99.0092	99.2468	98.7728	76.6565	19239	146	19236	239	30	12.5523
asubramanian-gatk	INDEL	*	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	homalt	97.3524	99.2470	95.5288	54.1878	8303	63	8888	416	317	76.2019
bgallagher-sentieon	SNP	ti	map_l150_m2_e1	het	98.8973	99.2470	98.5500	79.7478	12917	98	12913	190	30	15.7895
rpoplin-dv42	SNP	*	map_l125_m2_e1	homalt	99.5110	99.2471	99.7764	69.2363	17400	132	17400	39	38	97.4359
ciseli-custom	SNP	tv	func_cds	het	92.8964	99.2473	87.3095	32.0576	2637	20	2635	383	2	0.5222
rpoplin-dv42	INDEL	D1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt51bp_gt95identity_merged	*	99.3409	99.2474	99.4345	80.6493	1055	8	1055	6	6	100.0000
gduggal-snapfb	SNP	*	lowcmp_AllRepeats_lt51bp_gt95identity_merged	homalt	96.4947	99.2475	93.8904	70.4163	20047	152	20055	1305	194	14.8659
hfeng-pmm1	INDEL	D16_PLUS	lowcmp_SimpleRepeat_diTR_11to50	homalt	99.6226	99.2481	100.0000	62.3932	396	3	396	0	0
asubramanian-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4357	99.2481	99.6241	82.5115	264	2	265	1	1	100.0000
jmaeng-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.0619	99.2481	98.8764	82.8296	264	2	264	3	1	33.3333
ltrigg-rtg2	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2394	99.2481	99.2308	79.1667	264	2	258	2	1	50.0000
ckim-gatk	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.2481	99.2481	99.2481	82.9814	264	2	264	2	1	50.0000
ckim-vqsr	INDEL	D6_15	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.4350	99.2481	99.6226	83.0346	264	2	264	1	1	100.0000
egarrison-hhga	SNP	*	map_l100_m2_e0	*	99.5430	99.2483	99.8395	64.7214	73408	556	73409	118	50	42.3729
ckim-dragen	SNP	ti	map_l100_m1_e0	het	98.1230	99.2485	97.0227	71.3768	29717	225	29720	912	87	9.5395
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_quadTR_11to50	homalt	98.8761	99.2488	98.5061	62.8641	1057	8	1055	16	16	100.0000
dgrover-gatk	SNP	ti	map_l100_m0_e0	het	99.1285	99.2491	99.0081	74.4536	13878	105	13875	139	28	20.1439
dgrover-gatk	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3559	99.2492	99.4628	72.8768	1322	10	1296	7	5	71.4286
bgallagher-sentieon	INDEL	I1_5	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt51bp_gt95identity_merged	het	99.3181	99.2492	99.3870	72.2871	1322	10	1297	8	6	75.0000
bgallagher-sentieon	SNP	*	map_l150_m1_e0	het	98.7760	99.2493	98.3073	78.6499	19171	145	19165	330	49	14.8485
bgallagher-sentieon	INDEL	*	segdup	het	98.8787	99.2497	98.5105	95.1038	1455	11	1455	22	2	9.0909
dgrover-gatk	INDEL	*	segdup	het	99.0133	99.2497	98.7780	95.2951	1455	11	1455	18	2	11.1111
gduggal-snapfb	SNP	ti	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRgt6_lt101bp_gt95identity_merged	homalt	97.2641	99.2497	95.3564	60.4398	1455	11	1458	71	8	11.2676
rpoplin-dv42	INDEL	*	*	homalt	99.5190	99.2498	99.7896	55.3247	124233	939	124240	262	239	91.2214
ltrigg-rtg1	INDEL	*	lowcmp_SimpleRepeat_homopolymer_6to10	*	99.5721	99.2498	99.8965	56.0085	28048	212	27998	29	16	55.1724
hfeng-pmm2	SNP	ti	map_l125_m1_e0	het	99.1603	99.2500	99.0708	74.2780	18129	137	18125	170	14	8.2353
ckim-dragen	INDEL	D6_15	lowcmp_Human_Full_Genome_TRDB_hg19_150331_TRlt7_lt101bp_gt95identity_merged	het	98.8066	99.2505	98.3666	68.3281	3840	29	3794	63	61	96.8254
eyeh-varpipe	SNP	*	map_l250_m0_e0	*	98.0582	99.2506	96.8941	94.2786	2119	16	2059	66	4	6.0606
jlack-gatk	SNP	ti	map_l100_m2_e1	het	96.4266	99.2506	93.7588	78.7315	30728	232	30721	2045	177	8.6553
jlack-gatk	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.0654	99.2509	98.8806	66.5000	265	2	265	3	3	100.0000
hfeng-pmm1	SNP	*	map_l125_m2_e0	*	99.4680	99.2509	99.6861	70.6559	46373	350	46367	146	41	28.0822
cchapple-custom	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.2452	99.2509	99.2395	60.2118	265	2	261	2	2	100.0000
ltrigg-rtg2	INDEL	I1_5	lowcmp_SimpleRepeat_triTR_11to50	homalt	99.4350	99.2509	99.6198	57.2358	265	2	262	1	0	0.0000

PrecisionFDA Truth Challenge

PrecisionFDA
Truth Challenge